Strain, strain background (Escherichia coli) |
See Supplementary file 1A
|
This paper |
|
See Supplementary file 1A
|
Strain, strain background (Caulobacter crescentus) |
See Supplementary file 1A
|
This paper |
|
See Supplementary file 1A
|
Recombinant DNA reagent |
See Supplementary file 1B
|
This paper |
|
See Supplementary file 1B
|
Sequence-based reagent |
See Supplementary file 1B
|
This paper |
|
See Supplementary file 1B
|
Antibody |
Anti-GFP antibody (HRP) (Rabbit polyclonal) |
Abcam |
Cat# ab190584 |
Western blot (1:5000) |
Antibody |
Anti-GFP Sepharose beads |
Abcam |
Cat# ab69314 |
For ChIP-seq experiments |
Antibody |
Anti-FLAG antibody (HRP) (Mouse monoclonal) |
Merck |
Cat# A8592 |
Western blot (1:5000) |
Antibody |
Anti-FLAG M2 affinity agarose beads |
Merck |
Cat# A2220 |
For ChIP-seq experiments |
Commercial assay or kit |
Amersham Protran supported western blotting membranes, nitrocellulose |
GE Healthcare |
Cat# GE10600016 |
Pore size 0.45 μm, for DRaCALA assay |
Commercial assay or kit |
EnzChek Phosphate Assay Kit |
ThermoFisher |
Cat# E6646 |
|
Commercial assay or kit |
Gibson Assembly Master Mix |
NEB |
Cat# E2611S |
|
Commercial assay or kit |
Gateway BP Clonase II enzyme mix |
ThermoFisher |
Cat# 11789020 |
|
Commercial assay or kit |
Dip-and-Read Streptavidin biosensors SAX2 |
Sartorius UK |
Cat# 18-5019 |
|
Commercial assay or kit |
HisTrap High Performance column |
GE Healthcare |
Cat# GE17524801 |
|
Commercial assay or kit |
HisTrap Heparin High Performance column |
GE Healthcare |
Cat# GE17040601 |
|
Commercial assay or kit |
HiLoad 16/600 Superdex 200 pg column |
GE Healthcare |
Cat# GE28989335 |
|
Commercial assay or kit |
0.5 mL Zeba spin desalting columns |
ThermoFisher |
Cat# 89,882 |
7K Da molecular weight cutoff |
Peptide, recombinant protein |
BamHI-HF |
NEB |
Cat# R3136S |
20,000 units/mL |
Peptide, recombinant protein |
HindIII-HF |
NEB |
Cat# R3104S |
20,000 units/mL |
Chemical compound, drug |
Benzonase nuclease |
Merck |
Cat# E1014 |
250 units/µL |
Chemical compound, drug |
CTP |
ThermoFisher |
Cat# R0451 |
100 mM solution |
Chemical compound, drug |
CTPγS |
Jena Bioscience |
|
Custom synthesis (purity ≥96%) |
Chemical compound, drug |
P32-α-CTP |
Perkin Elmer |
Cat# BLU008H250UC |
3,000 Ci/mmol, 10 mCi/mL, 250 µCi |
Chemical compound, drug |
Bismaleimidoethane (BMOE) |
ThermoFisher |
Cat# 22323 |
Dissolved in DMSO |
Chemical compound, drug |
AcTEV protease |
ThermoFisher |
Cat# 12575015 |
10 units/µL |
Software, algorithm |
BLItz Pro |
Molecular Devices |
Cat# 50-0156 |
Version 1.2 |
Software, algorithm |
AIMLESS |
Evans and Murshudov, 2013
|
http://www.ccp4.ac.uk/
|
Version 0.7.4 |
Software, algorithm |
BUCCANEER |
Cowtan, 2006
|
http://www.ccp4.ac.uk/
|
Version 1.6.10 |
Software, algorithm |
Coot |
Emsley and Cowtan, 2004
|
http://www.ccp4.ac.uk/
|
Version 0.9.5 |
Software, algorithm |
CHAINSAW |
Stein, 2008
|
http://www.ccp4.ac.uk/
|
Version 7.0.077 |
Software, algorithm |
DIALS |
Winter et al., 2018
|
https://dials.github.io
|
Version 3.1.0 |
Software, algorithm |
Excel 2016 |
Microsoft |
RRID:SCR_016137
|
Version 16.0 |
Software, algorithm |
GraphPad Prism 8 |
GraphPad Software |
RRID:SCR_002798
|
Version 8 |
Software, algorithm |
ImageJ |
NIH |
https://imagej.net/ RRID:SCR_003070
|
Version 1.50 |
Software, algorithm |
Image Studio Lite |
LI-COR Biosciences |
RRID:SCR_013715
|
Version 5.2 |
Software, algorithm |
PISA |
Krissinel, 2015
|
http://www.ccp4.ac.uk/pisa/
|
Version 2.1.1 |
Software, algorithm |
MolProbity |
Williams et al., 2018
|
http://molprobity.biochem.duke.edu/
|
Version 4.5 |
Software, algorithm |
PHASER |
McCoy et al., 2007
|
https://www.phenix-online.org/
|
Version 2.8.2 |
Software, algorithm |
PyMOL |
The PyMOL Molecular Graphics System |
https://pymol.org/2/
|
Version 2.4.0 |
Software, algorithm |
R |
R Foundation for Statistical Computing |
https://www.r-project.org/
|
Version 3.2.4 |
Software, algorithm |
REFMAC5 |
Murshudov et al., 1997
|
http://www.ccp4.ac.uk/
|
Version 5.8.0258 |
Software, algorithm |
SCULPTOR |
Bunkóczi and Read, 2011
|
http://www.ccp4.ac.uk/
|
Version 0.0.3 |
Software, algorithm |
XDS |
Kabsch, 2010
|
https://xds.mr.mpg.de/
|
Version Nov11-2017 |
Software, algorithm |
XIA2 |
Winter, 2009
|
https://xia2.github.io/index.html
|
Version 0.3.7.0 |