Table 2.
Recombinants, their putative second parental lineages, and inferred breakpoints according to 3SEQ
| Second parent lineage | Uncorrected p value | Corrected p value | Breakpoint coordinatesa | |
|---|---|---|---|---|
| Group A | B.1.177 | 5E-13 (1E-12)b | 0.00003 (0.00006)b | 21,255–21,613 (18,998–20,294)b |
| Group Bc | 5.70E-07 | 1 | 6,528–6,953 | |
| Group C | B.1.221.1 | 4.26E-10 | 0.02686 | 25,996–27,441 |
| Group D | B.1.36.39 | 3E-12 | 0.0002 | 20,703–23,062 |
| CAMC-CBA018 | B.1.177 | 2E-12 | 0.00014 | 20,389–21,254 |
| CAMC-CB7AB3 | B.1.177 | 1E-11 | 0.00065 | 3,267–4,474 and 20,389–21,254 |
| MILK-103C712 | B.1.177.17 | 1.06E-10 | 0.00673 | 408–444 and 26,801–27,876 |
| QEUH-1067DEF | B.1.177.9 | 4.12E-10 | 0.026 | 10523 – 10869 |
The first parental lineage is always B.1.1.7. p values for the Δm,n,2 statistic are reported uncorrected and after Dunn-Sidak correction for multiple comparisons.
a
The breakpoint coordinates reported by 3SEQ are the positions of spaces between nucleotides.
b
For group A, the results for LIVE-DFCFFE (in parentheses) were different from those of the rest of the group.
c
Statistics are from a separate run with the closest neighbors by genetic similarity included in the parental dataset.