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. Author manuscript; available in PMC: 2021 Dec 1.
Published in final edited form as: Nat Genet. 2021 May 24;53(6):770–777. doi: 10.1038/s41588-021-00873-4

Table 3. Data sets analyzed.

Number of samples passing the previously reported QC filters and number of genes with non-zero observations in at least 1% of samples, or passing the previously reported QC filters54.

Dataset Protocol Number of samples Number of genes Source
(Sorted) T cells GemCode 10,209 6,530 53
(Sorted) B cells GemCode 10,085 6,417 53
iPSC Fluidigm C1 5,597 9,957 54
T cell/B cell mixa GemCode 20,294 6,647 53
Cytotoxic T/Naive T mixa GemCode 20,688 6,246 53
Brain DroNc-Seq 14,963 11,744 55
Kidney 10X Chromium v2 11,233 15,496 56
PBMC 10X Chromium v3 11,769 12,144 b
Retina 10X Chromium v2 21,285 10,047 57
Control 1 10X Chromium v2 2,000 88 58
Control 2 10X Chromium v2 2,000 88 58
Control Drop-Seq 84 81 59
Control GemCode 1,015 91 53
Control InDrops 953 103 60
(a)

Mixture data sets are generated in silico by concatenating the data and then applying QC filters.

(b)

Data downloaded from https://10xgenomics.com/data.