FIG 5.

β-Diversity of the zebrafish intestinal microbiome following V. cholerae V52 infection in a zebrafish host. (A) β-Diversity of the zebrafish intestinal microbiome following a 24-h V. cholerae V52 infection expressed as PCoA plots based on Jaccard and Bray-Curtis dissimilarity indices. Statistical tests were one-way PERMANOVAs run using Adonis with the strata function controlling for collection date. (B) Linear discriminant analysis effect size (LEfSe) figures displaying which ASVs experienced significant shifts following the V. cholerae infection (again, controlling for sample collection date). All of the ASVs that had an LDA score greater than 2.5 are presented. Fish numbers: control, n = 9; V52, n = 8.