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. Author manuscript; available in PMC: 2021 Aug 18.
Published in final edited form as: ACM BCB. 2021 Aug;2021:49. doi: 10.1145/3459930.3469560

Table 6:

Performance of the best performing model (i.e., RoBERTa-MIMIC-Trial) by entity types on FRD.

Model Strict Criterion Relaxed Criterion
Precision Recall F1 Precision Recall F1
Overall 0.7680 0.8027 0.7849 0.9028 0.9290 0.9157
age 0.9696 0.9733 0.9714 0.9696 0.9733 0.9714
allergy_name 0.8553 0.7010 0.7705 0.9434 0.7680 0.8467
bmi 0.9130 0.8750 0.8936 0.9565 0.9583 0.9574
cancer 0.7436 0.7835 0.7630 0.8983 0.9250 0.9114
chronic_disease 0.7297 0.7789 0.7535 0.8892 0.9304 0.9093
clinical_variable 0.7888 0.7633 0.7759 0.9151 0.8729 0.8935
contraception_consent 0.6473 0.7929 0.7128 0.8164 0.9349 0.8717
ethnicity 1.0000 0.7500 0.8571 1.0000 0.7500 0.8571
gender 0.9333 0.9385 0.9359 0.9861 0.9944 0.9902
language_fluency 0.8222 0.7872 0.8043 0.9778 0.9574 0.9675
lower_bound 0.8230 0.8623 0.8422 0.9163 0.9565 0.9360
pregnancy 0.8228 0.8698 0.8457 0.9489 0.9968 0.9723
technology_access 0.3846 0.4545 0.4167 1.0000 1.0000 1.0000
treatment 0.7178 0.7747 0.7451 0.8745 0.9223 0.8978
upper_bound 0.8208 0.8417 0.8311 0.9353 0.9555 0.9453