Table 3.
Top 100 differentially expressed genes (DEGs) in ΔSE12313-b
| Upregulated | Downregulated | ||||||
|---|---|---|---|---|---|---|---|
| Gene | logFC | Gene | logFC | Gene | logFC | Gene | logFC |
| RIBC2 | 7.6 | HIST1H2BJ | 4.9 | EPB41L3 | –12.3 | PRLR | –5.7 |
| TRPM2 | 7.6 | CEP55 | 4.8 | PXDN | –11.5 | RIT2 | –5.7 |
| SLITRK5 | 7.2 | GTSE1 | 4.8 | BEST1 | –8.7 | LINC01477 | –5.7 |
| ESCO2 | 6.9 | FCER2 | 4.8 | CHRNE | –8.7 | DAPK1 | –5.7 |
| ZNF114 | 6.8 | AURKB | 4.7 | THSD7B | –8.6 | CFB | –5.7 |
| LINC01291 | 6.7 | KIF15 | 4.7 | CNTNAP4 | –8.5 | IL1B | –5.7 |
| VASN | 6.5 | CORO1A | 4.7 | TMEM178A | –8.4 | LCP2 | –5.6 |
| DRGX | 6.4 | CDC20 | 4.7 | VIPR1 | –8.2 | HSD11B1 | –5.6 |
| E2F2 | 6.2 | KIFC1 | 4.7 | NLRC4 | –8.1 | SLC6A1 | –5.6 |
| C10orf90 | 6.2 | GINS2 | 4.6 | MAGEC2 | –7.7 | SYT12 | –5.6 |
| RRM2 | 6.2 | ASPM | 4.6 | CYBA | –7.7 | PLCB2 | –5.6 |
| ORC1 | 6.2 | PKMYT1 | 4.6 | LINC01425 | –7.7 | WAS | –5.5 |
| FAM111B | 6.2 | PLPP4 | 4.6 | LOC100505664 | –7.5 | UPB1 | –5.5 |
| TK1 | 6.1 | ANLN | 4.5 | LOC105376105 | –7.4 | NHEG1 | –5.4 |
| RAET1G | 6.1 | CDCA3 | 4.5 | THY1 | –7.4 | MUC15 | –5.4 |
| METTL7A | 6.1 | RASL11A | 4.5 | ATG9B | –7.3 | MATK | –5.4 |
| SORL1 | 6.0 | CDCA8 | 4.5 | LUZP2 | –7.3 | GPR158 | –5.4 |
| MYBL2 | 6.0 | GINS4 | 4.4 | PPP1R32 | –7.3 | BMPER | –5.3 |
| SPC25 | 6.0 | HIST1H3J | 4.4 | FAM9B | –7.2 | PTPRO | –5.3 |
| LINP1 | 6.0 | ASB9 | 4.4 | SYT9 | –7.2 | SELENOP | –5.3 |
| AQP3 | 5.9 | CCNB2 | 4.4 | IGFN1 | –7.2 | MAMDC2 | –5.3 |
| VIT | 5.9 | NDC80 | 4.3 | MAP6 | –7.1 | NFE4 | –5.3 |
| LINC00565 | 5.7 | DTL | 4.3 | IGSF9B | –7.1 | LINC01344 | –5.3 |
| ITGB2-AS1 | 5.7 | SGO1 | 4.3 | ARLNC1 | –7.0 | MRC2 | –5.3 |
| MCM10 | 5.7 | HIST1H2BL | 4.3 | SRGAP3 | –7.0 | CTSO | –5.3 |
| SERPINF2 | 5.7 | NUF2 | 4.3 | LINC01060 | –7.0 | FER1L6 | –5.2 |
| PCLAF | 5.6 | CDC6 | 4.3 | SOCS2-AS1 | –6.9 | MYOM1 | –5.2 |
| MKI67 | 5.6 | TOP2A | 4.3 | INHBE | –6.8 | SPEF2 | –5.2 |
| ERCC6L | 5.5 | HIST1H3D | 4.2 | ACP7 | –6.8 | ND1 | –5.1 |
| KIF18B | 5.3 | LRRC7 | 4.2 | PDE7B | –6.7 | LUCAT1 | –5.1 |
| SHCBP1 | 5.3 | KIF11 | 4.2 | XIST | –6.7 | ITGA2B | –5.0 |
| APOBEC3B | 5.3 | KIF2C | 4.2 | IGFBP3 | –6.7 | LYRM4-AS1 | –5.0 |
| HIST1H1B | 5.3 | E2F8 | 4.2 | DCT | –6.6 | GALNT3 | –4.9 |
| TCF19 | 5.2 | FAM83D | 4.2 | MACROD2 | –6.6 | LINC00313 | –4.9 |
| OIP5 | 5.2 | LOC105373354 | 4.2 | LINC02141 | –6.6 | SOX8 | –4.9 |
| EEPD1 | 5.2 | HMMR | 4.2 | FSIP2 | –6.4 | MMP10 | –4.9 |
| EXO1 | 5.2 | CDK1 | 4.2 | ARHGAP9 | –6.4 | SGCZ | –4.9 |
| KSR2 | 5.1 | BUB1 | 4.1 | CEACAM22P | –6.3 | ADAMTS20 | –4.9 |
| PBK | 5.1 | CDCA2 | 4.1 | KLHDC7B | –6.2 | ZMAT1 | –4.8 |
| SKA1 | 5.1 | DLEU2 | 4.1 | LINC01619 | –6.2 | SLC17A7 | –4.8 |
| ZWINT | 5.1 | CDCA5 | 4.1 | XAF1 | –6.2 | SCN3A | –4.8 |
| PIMREG | 5.1 | SPRR2B | 4.1 | TNC | –6.1 | LGR6 | –4.8 |
| KIF20A | 5.1 | CENPF | 4.1 | SLC22A31 | –6.1 | GOLGA8R | –4.7 |
| BIRC5 | 5.1 | POLQ | 4.1 | MAGEB18 | –6.1 | MUC16 | –4.7 |
| FAM222A | 5.0 | NEK2 | 4.1 | LINC02167 | –6.1 | STC1 | –4.7 |
| TMSB15A | 5.0 | HIST1H2A | 4.1 | HOXB9 | –6.0 | HHIPL1 | –4.7 |
| CENPA | 5.0 | MPP2 | 4.0 | MAP2 | –6.0 | LIPC | –4.7 |
| NCAPG | 5.0 | AKAP5 | 4.0 | STXBP5-AS1 | –5.9 | BAIAP3 | –4.6 |
| DLGAP5 | 5.0 | PRC1 | 4.0 | GRIN3B | –5.8 | TGFBR3L | –4.6 |
| DACT3 | 5.0 | SKA3 | 4.0 | SHANK2 | –5.8 | CCDC146 | –4.6 |