TABLE 6.
MGEs associated with antibiotic resistance genes in the MRSE strains.
| Isolate | Contig | Synteny | Plasmid/chromosomal sequence with closest nucleotide homology (accession number) |
| C35 | 237 | msr(A):recombinase family protein | Staphylococcus warneri strain WB224 plasmid pWB224_2 (CP053472.1) |
| 376 | Tet(K):TPA | S. warneri strain 16A plasmid (CP031268.1) | |
| C36 | 33 | BlaI:BlaR1:blaZ:transposase:tyrosine-type recombinase/integrase | Staphylococcus epidermidis strain O47 chromosome (CP040883.1) |
| 59 | RadC:erm(A): ANT(9)-Ia:transposase: tyrosine-type recombinase/integrase:tyrosine-type recombinase/integrase:RadC:recombinase | Staphylococcus aureus strain BPH2056 genome assembly, chromosome (LR027874.1) | |
| 81 | IS431mec (IS257):mecA:MecR1 | S. aureus strain Guangzhou-SAU071 chromosome (CP053183.1) | |
| 91 | relaxase:MobC:cat(pC233) | S. aureus plasmid pC223 (AY355285.1) | |
| 93 | relaxase:cat(pC221):relaxase | S. aureus strain 08-028 plasmid (CP045437.1) | |
| C38 | 42 | recombinase:CcrB:IS1182:MecR1:mecA:IS6-like element(IS257) | S. aureus strain NZAK3, chromosome (LT009690.1) |
| 54 | erm(C):ErmCL | S. aureus strain 18082 chromosome | |
| C40 | 31 | YycH:IS6-like element (IS257):mecA:MecR1 | S. epidermidis strain HD66 chromosome (CP040868.1) |
| 61 | Erm(C):ErmCL:RepL | S. aureus strain 18082 chromosome (CP041633.1) | |
| C81 | 30 | BlaI:BlaR1:blaZ:transposase:XerC:Tn554-related transposase A | S. epidermidis strain O47 chromosome (CP040883.1) |
| 144 | Recombinase/integrase:Tn554:ANT(9)-Ia:erm(A) | S. aureus strain SR153 chromosome (CP048643.1) | |
| 148 | IS6-like element (IS257):mecA:MecR1 | S. aureus strain Guangzhou-SAU071 chromosome (CP053183.1) | |
| 160 | cat(pC221):Erm(B) | Staphylococcus pseudintermedius strain AH18 chromosome (CP030374.1) | |
| C119 | 12 | recombinase:BlaI:BlaR1:blaZ: type I toxin–antitoxin system | S. epidermidis strain SE95 plasmid (CP024439.1) |
| 204 | Erm(C):ErmCL | S. aureus strain 18082 chromosome (CP041633.1) | |
| C133 | 6 | TPA:Tn554:IS1182:blaZ:BlaR1:BlaI | S. epidermidis strain NCCP 16828 chromosome (CP043847.1) |
| C135 | 70 | resolvase:CcrB:IS1182:MecR1:mecA | S. aureus strain ER03750.3 chromosome (CP030557.1) |
| 75 | IS6:blaZ:BlaR1:BlaI:recombinase | S. epidermidis strain Z0118SE0260 chromosome (CP060794.1) | |
| 175 | Fst:msr(A):Mph(C) | S. aureus strain ER02243.3 plasmid (CP030478.1) | |
| C137 | 31 | IS6:blaZ:BlaR1:BlaI:recombinase | S. epidermidis strain SESURV_p1_1200 chromosome (CP043796.1) |
| C138 | 4 | BlaI:BlaR1:blaZ:TN554:TPA | S. epidermidis strain NCCP 16828 chromosome (CP043847.1) |
| 37 | dfrG:Insertion element (TPA) | S. epidermidis strain NCCP 16828 chromosome (CP043847.1) | |
| C145 | 30 | IS1182:MecR1:mecA | S. aureus strain NRS484 chromosome (CP026066.1) |
| 34 | GNAT family N-acetyltransferase:APH(3′)-IIIa:Peptide binding protein:erm(B):antitoxin: peptide-binding protein: IS1216(IS6):recombinase | Enterococcus faecium strain VVEswe-R plasmid (CP041269.2) | |
| 36 | Lnu(B):ant(6)-Ia:sat1):ISEfm1 | E. faecium strain Efm0123 plasmid (KR066794.1) | |
| 54 | GNAT family N-acetyltransferase:APH(2′′)-Ia | Staphylococcus hominis strain FDAARGOS_661 plasmid (CP054551.1) | |
| C148 | 17 | recombinase:BlaI:BlaR1:blaZ:type I toxin–antitoxin system | Staphylococcus cohnii strain FDAARGOS_744 plasmid (CP054810.1) |
MGEs, mobile genetic elements; MRSE, methicillin-resistant Staphylococcus epidermidis.