Table 2.
Nucleotide and amino acid conservation of mating type and flanking genes in the genomes of eight Calonectria isolates.
| Isolates | Nucleotide conservation (%) |
||||||
|---|---|---|---|---|---|---|---|
| SLA2 | MAT1-1-1 | MAT1-1-2 | MAT1-1-3 | MAT1-2-1 | MAT1-2-12 | APN2 | |
| Ca. henricotiae CBS 138102 | 66.37 (2 463/3 711)1 | 60.82 (742/1 220) | 45.63 (657/1 440) | 66.93 (500/747) | 54.20 (1 188/2 192) | ||
| Ca. naviculata CBS 101121 | 71.95 (2 463/3 423) | 60.77 (742/1 221) | 45.72 (657/1 437) | 67.84 (500/737) | 53.71 (1 188/2 212) | ||
| Ca. pauciramosa CMW 7592 | 71.89 (2 463/3 426) | 59.50 (742/1 247) | 45.94 (657/1 430) | 66.58 (500/751) | 54.57 (1 188/2 177) | ||
| Ca. hongkongensis CMW 47271 | 71.31 (2 463/3 454) | 60.92 (742/1 218) | 45.98 (657/1 429) | 56.99 (477/837) | 53.71 (1 188/2 212) | ||
| Ca. leucothoes CBS 109166 | 71.62 (2 463/3 439) | 58.24 (477/819) | 49.34 (452/916) | 54.22 (1 188/2 191) | |||
| Ca. pauciramosa CMW 5683 | 71.87 (2 463/3 427) | 58.96 (477/809) | 49.83 (452/907) | 54.57 (1 188/2 177) | |||
| Ca. pseudonaviculata CBS 139394 | 71.08 (2 463/3 465) | 57.26 (477/833) | 49.24 (452/918) | 54.20 (1 188/2 192) | |||
| Ca. pseudoreteaudii YA51 | 71.81 (2 463/3 430) | 58.10 (477/821) | 49.83 (452/907) | 55.38 (1 188/2 145) | |||
| Isolates | Amino acid conservation (%) |
||||||
|---|---|---|---|---|---|---|---|
| SLA2 | MAT1-1-1 | MAT1-1-2 | MAT1-1-3 | MAT1-2-1 | MAT1-2-12 | APN2 | |
| Ca. henricotiae CBS 138102 | 83.48 (945/1 132)2 | 68.10 (254/373) | 45.61 (187/410) | 75.00 (150/200) | 67.75 (416/614) | ||
| Ca. naviculata CBS 101121 | 89.83 (945/1 052) | 68.10 (254/373) | 45.61 (187/410) | 76.53 (150/196) | 66.99 (416/621) | ||
| Ca. pauciramosa CMW 7592 | 89.83 (945/1 052) | 66.32 (254/383) | 45.95 (187/407) | 75.00 (150/200) | 68.53 (416/607) | ||
| Ca. hongkongensis CMW 47271 | 89.83 (945/1 052) | 68.28 (254/372) | 45.95 (187/407) | 62.30 (152/244) | 66.99 (416/621) | ||
| Ca. leucothoes CBS 109166 | 89.83 (945/1 052) | 62.81 (152/242) | 39.65 (113/285) | 68.42 (416/608) | |||
| Ca. pauciramosa CMW 5683 | 89.83 (945/1 052) | 63.87 (152/238) | 40.07 (113/282) | 68.53 (416/607) | |||
| Ca. pseudonaviculata CBS 139394 | 89.83 (945/1 052) | 62.04 (152/245) | 39.51 (113/286) | 67.75 (416/614) | |||
| Ca. pseudoreteaudii YA51 | 89.83 (945/1 052) | 62.81 (152/242) | 40.07 (113/282) | 68.99 (416/603) | |||
1The percentage of conserved nucleotides including exon and intron (length of conserved nucleotides/full-length of nucleotides).
2The percentage of conserved amino acid (length of conserved amino acid/full-length of amino acid).