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. 2021 Aug 19;10(33):e00547-21. doi: 10.1128/MRA.00547-21

TABLE 1.

LCDV-JP_Oita_2018 sequencing statistics

Parameter Data for:
Illumina reads (accession no. DRR213899)
Nanopore reads (accession no. DRR213900)
Raw Filtered Raw Filtered
No. of reads 3,682,911 3,659,510 97,124 1,065
Total length (bp) 867,436,261 863,771,560 630,612,147 71,205,129
Avg read length (bp) 118 118 6,493 66,859
N50 (bp) 15,501 64,930
No. of mapped reads 2,570,459 2,530,934 66,333 1,065
Proportion mapped (%) 69.79 69.16 68.30 100.00
Mean coveragea (×) 3,137 3,161 2,480 372
a

Calculated using SAMtools coverage v1.10 (12) from alignments generated by minimap2 v2.17 (11), with the settings ax sr for Illumina reads and ax map-ont for Nanopore reads.