Table 1. Sequencing statistics of longitudinal PBMC samples from subject QA013.
PBMC time point | Live PBMC count | PBMC viability | Ab chain | Raw MiSeq reads | Productive deduplicated sequences | Sequence coverage of sampled blood PBMCs | Sequence coverage of QA013 D2282 whole-body blood* repertoire |
---|---|---|---|---|---|---|---|
D-379 | 2.60E+06 | 96% | IgM | 1358426 | 2700 | 0.8% | 0.002% |
IgG | 1357742 | 8350 | 14% | 0.03% | |||
IgK | 1701268 | 21043 | 6% | 0.01% | |||
IgL | 1528383 | 27458 | 7% | 0.02% | |||
D-351 | 2.50E+06 | 100% | IgM | 1186865 | 2213 | 0.7% | 0.002% |
IgG | 1290351 | 7093 | 12% | 0.03% | |||
IgK | 1724651 | 19835 | 5% | 0.01% | |||
IgL | 1116583 | 23489 | 6% | 0.01% | |||
D385 | 3.90E+06 | 100% | IgM | 1299494 | 2039 | 0.4% | 0.001% |
IgG | 1512588 | 6222 | 7% | 0.02% | |||
IgK | 2058137 | 22252 | 4% | 0.01% | |||
IgL | 1454466 | 27107 | 5% | 0.01% | |||
D765 | 6.80E+06 | 96% | IgM | 1264049 | 2480 | 0.3% | 0.001% |
IgG | 1465034 | 7424 | 12% | 0.03% | |||
IgK | 2083938 | 21738 | 2% | 0.00% | |||
IgL | 1556226 | 26530 | 3% | 0.01% |
*Assuming PBMC samples were from a 10 mL blood draw and that adults have 4500 mL total blood volume.