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. 2021 Aug 19;9:140. doi: 10.1186/s40478-021-01239-x

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — Protein–protein interaction network among genes showing increased expression in recovery-phase relative to control microglia isolated from the cortex. The network was generated from genes differentially expressed with LFC ≥ 2 and FDR < 0.05. The number of edges in the network (n = 780) was significantly greater than expected in a random gene sample of the same order (expected n = 142, p < 10^–16). The network was enriched for proteins functioning in immune system processes (FDR = 3.68 × 10^–27), inflammatory response (FDR = 5.76 × 10^–16), chemotaxis (FDR = 1.45 × 10^–12) and cell motility (FDR = 5.67 × 10^–8), among other gene ontology annotations. The network was generated using STRING (https://string-db.org)