Table 2. IgV sequences identified by NGS/bioinformatics and Sanger sequencing methods.
Items | Ig Subtypes | transcript tpm* | transcript read count | transcript avg coverage | TOPO-Sanger finds | IgV validated by recombinant ab: antigen-binding assay |
---|---|---|---|---|---|---|
SodANRC-13810 | heavy, IgG1 | 963725.1311 | 88897.61877 | 10633.68646 | Yes | True |
light, Igκ-1 | 39232.47749 | 3635.001071 | 883.7117677 | Yes | True | |
light, Igκ-2 | 304067.109 | 21428.2634 | 6339.72289 | No | True | |
light, Igκ-3 | 38357.25488 | 2533.438146 | 783.5375709 | No | False No/little Secretion | |
light, Igκ-4 | 13688.0569 | 849.329898 | 273.9773865 | No | False No/little Secretion | |
PstS1NRC-2410 | heavy, IgG1 | 968826.8725 | 40043.93523 | 9073.399221 | No | True |
light, Igκ-DIV | 843113.5427 | 20217.92773 | 6151.499309 | Yes | True | |
light, Igκ-S26 | 3807.603 | 74.34237 | 25.69437 | No | False | |
KatGNRC-49680 | heavy, IgM | 610640.4988 | 17956.89359 | 4519.352413 | No | True |
heavy, IgM_KVS | 378156.7621 | 11071.18364 | 2795.753444 | Yes | False No/little Secretion | |
light, Igκ | 453166.48 | 9730.178 | 2884.44 | Yes | True | |
GroESNRC-2894 | heavy, IgG2a | 974745.1045 | 6680.858709 | 1397.669186 | Yes | True |
light, Igκ | 47876.02964 | 245.414241 | 74.97380071 | Yes | True |
*: transcripts per million transcripts.