Subject | Bioinformatics/Omics: Transcriptomics |
Specific subject area | Assembly, annotation and structural analysis of trypsin-like SerP and SerPH sequences from the Tenebrio molitor transcriptome using bioinformatics tools. |
Type of data | Tables and Supplementary text file, containing assembled sequences in fasta format. |
How data were acquired | RNA sequencing by Illumina HiSeq 2000, structural analysis with appropriate software |
Data format | Raw |
Parameters for data collection | Laboratory colonies of T. molitor were maintained on a diet consisting of either 50–100% oat flakes or 85% stabilized wheat germ. RNA was isolated and sequenced from the larval midgut and from eggs, I and IV instar larvae, pupae, young males and females with non-chitinized integuments and two week old adult males and females of T. molitor. Parameters for sequencing, contigs assembly and analysis programs were default. |
Description of data collection | mRNA-isolation, high throughput RNA-sequencing using Illumina HiSeq 2000, automated and manual assembly of contigs to full-length sequences, annotation and structural analysis using bioinformatic tools. |
Data source location | Institution: USDA Agricultural Research Service, Center for Grain and Animal Health Research City/Town/Region: Manhattan, KS 66502 Country: USA Latitude and longitude: 27.2046° N, 77.4977° E Institution: Lomonosov Moscow State University, A.N. Belozersky Institute of Physico-Chemical Biology City/Town/Region: Moscow, 119992 Country: Russia Latitude and longitude: 55.705836° N, 37.521456° E |
Data accessibility | Repository name: NCBI Data identification number: Accession numbers unique to each sequence are listed in Tables 1 and 2. Direct URL to data: Direct URLs to data are presented as hyperlinks in Tables 1 and 2, which can be opened by clicking on the corresponding accession number. Data are also available with the article in the Supplementary file. |