Table 5. Estimation of effective population size and demographic expansion time under the assumptions of the models of Burban et al. (1999) and Kuhner (2006), evaluated in Paquisa and LNP (Lauca, Misituni, Copapujo, Chuviri).
| Demographic expansion model of Schneider & Excoffier (1999) Arlequin v. 3.5.1 | ||||
|---|---|---|---|---|
| τ=2µt | Ne0 | Ne1 | Time (years) | |
| LNP | 0.342 [0–2.02] |
7546.01 | 16150.31 | 5245 [0–37653] |
| Paquisa | 0.965 [0–2.094] |
0 | 300546.01 | 14800 [0–32055] |
| Coalescence model of likelihood Kuhner (2006) LAMARC v.3.2 | ||||
| G | Nei | Nef | Time (years) | |
| LNP | 14701.9 [19292.9–11128.6] | 34865.8 [76900.2– 11993.3] |
3.32*106 [6.50*106–1.15*106] |
7750 [5750–10250] |
| Paquisa | 12374.5 [17953.9-6510.2] |
6.59*106 [2.11*108– 3.72*104] |
6.42*108 [1.88*1010–3.55* 106] | 9250 [6250–17500] |
Notes.
- τ
- tau
- µ
- nucleotide substitution rate
- t
- time from expansion (in mutational time units)
- Ne0
- initial effective size
- Ne1
- final effective size
- G
- growth rate
- Nei
- initial effective size
- Nef
- final effective size
- []
- confidence interval