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. Author manuscript; available in PMC: 2021 Aug 24.
Published in final edited form as: Cell Rep. 2021 Apr 6;35(1):108944. doi: 10.1016/j.celrep.2021.108944

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
CD45 BioLegend 103116
CD3 Fisher 460032-80
CD4 BioLegend 100438
CD8 BioLegend 100712
NK1.1 BioLegend 108708
CD19 Miltenyi 130-105-171
CD44 BioLegend 103025
CD62L BioLegend 104417
TIM3 BioLegend 119721
LAG3 BioLegend 125219
CXCR3 BioLegend 126531
CD8a Thermofisher 46-0081-82
CD11C BioLegend 117330
F4/80 Thermofisher 17-4801-80
CD206 BioLegend 141705
CD11b BioLegend 101217
I-A/I-E BioLegend 107622
Ly6G BioLegend 127617
Ly-6C BioLegend 128035
CD103 BD 564322
PD-L1 BD 740614
CD45 BD 564279
CD69 Invitrogen 11-0691-85
FOXP3 BioLegend 126404
CD25 Invitrogen 56-0251-80
MHC Class I Invitrogen 25-5958-80
CD137 Invitrogen 46-1371-80
CD134 BD 740945
CD3e BD 563024
CD8 BioLegend 100712
CD11b BioLegend 101267
CD8-depleting antibody (YTS 169.4) BioXcell (West Lebanon, NH) BPO 117
Anti-OX-40 (OX-86) BioXcell (West Lebanon, NH) BE0031
Anti-4-1BB (LOB12.3) BioXcell (West Lebanon, NH) BPO169
Purified anti-mouse CD183 (CXCR3) Biolegend 126502
Anti-CD3e Biolegend 100302
Anti-CD28 Biolegend 102102
Anti-mouse CD16/32 Biolegend 156604
RB1 Cell signaling 9309S
Phospho- RB (S807/S811) rabbit antibody Cell signaling 8516S
S6 Ribosomal protein rabbit antibody Cell signaling 2217S
Phospho-S6 (S235/236) Ribosomal protein rabbit antibody Cell signaling 2211S
Phospho-S6 (S240/244) ribosomal protein rabbit antibody Cell signaling 5364T
Phospho-p70 S6 (T389) kinase rabbit antibody Cell signaling 9234T
p70 S6 kinase rabbit antibody Cell signaling 2708T
p21 Waf1/Cip1 rabbit antibody Cell signaling 2947S
β-actin rabbit antibody Cell signaling 4970S
β-tubulin rabbit antibody Cell signaling 2146S
HSP90 rabbit antibody Cell signaling 4874S
Bacterial and Virus Strains
NA
Biological Samples
NA
Chemicals, Peptides, and Recombinant Proteins
Dulbecco’s modified Eagle’s medium/F12 Gibco 11330032
GlutaMAX Gibco 35050061
Gibco™ Penicillin-Streptomycin Gibco 15-140-122
Fetal Bovine Serum Gibco 16000036
Palbociclib Pfizer NA
Palbociclib LC laboratories P-7766
Rapamycin Tocris 1292
N-acetylcysteine Sigma A9165
benzylserine Sigma 13900
Bay876 Sigma SML1774
BKM120 Sigma 10296
Maraviroc Adooq A10556
CellTracker Green CMFDA Dye Invitrogen C2925
Murine recombinant CCL5 Peprotech 25007
MitoTracker Green Invitrogen T7514
CellRox Deep Red Invitrogen C10422
LysoTracker Deep Red Invitrogen L12492
DAPI Invitrogen D1306
Hoechst 33342 Invitrogen H1399
JC-1 Mitochondrial Membrane Potential Dye Thermo Fisher 3168
Fixable Viability Dye eFluor™ 780 Invitrogen 65-0865-14
LIVE/DEAD™ Fixable Aqua Dead Cell Stain Kit Thermofisher L34957
Everolimus LC Laboratories E-4040
10X Tris/Glycine/SDS Buffer Biorad 1610772
Tris Buffer Saline Fisher Bioreagents BP2471-1
Tween 20 Fisher Bioreagents BP 337-500
Trans Blot Turbo RTA transfer kit Biorad 170-4270
Bovine serum Albumin Fisher Bioreagents BP9706-100
Protein assay dye reagent concentrate Biorad 5000006
Critical Commercial Assays
Reverse Phase Protein Array (RPPA) Core Facility at MD Anderson Cancer Center (Houston, TX) NA
RNA-easy mini kit Qiagen 74104
iScript cDNA synthesis kit BioRad 1708890
Quantiline ELISA HumanCXCL10/IP-10 R&D system DIP100
Quantiline ELISA Human CCL5/RANTES R%D system DRN00B
Tumor tissue dissociation kit Miltenyi Biotech 130-096-730
FXP3/ Transcription Factor Staining Buffer Set Invitrogen 00-5523-00
SYBR-green master mix BioRad 1725270
Senescence β-Galactosidase Staining Kit Sigma CS0030
Deposited Data
N/A
Experimental Models: Cell Lines
MCF7 Cell line American Type Culture Collection ATCC® HTB22™
Cal120 cell line Carlos L. Arteaga Vanderbilt-Ingram Cancer Center. NA
MDA-MB-453 cell line Carlos L. Arteaga Vanderbilt-Ingram Cancer Center. NA
MDA-MB-468 cell line Carlos L. Arteaga Vanderbilt-Ingram Cancer Center. NA
HCC70 cell line Carlos L. Arteaga Vanderbilt-Ingram Cancer Center. NA
BT20 cell line Carlos L. Arteaga Vanderbilt-Ingram Cancer Center. NA
PYMT cell line Philip Owens (VA Eastern Colorado Health Care System, Denver, CO) NA
PYMT-OVA cell line David DeNardo (Washington University St. Louis, St. Louis MO) NA
Experimental Models: Organisms/Strains
C57BL/6 mice The Jackson Laboratory 000664
C57BL/6 mice Charles River/NCI Strain code :027
OT-1 mice Marc Boothby, Richard O’Neil (Vanderbilt University, Nashville, TN) NA
OT-1 mice The Jackson Laboratory 003831
FVB-PYMT transgenic mice Harold Moses (Vanderbilt University, Nashville, TN) NA
Oligonucleotides
Primer: h CXCL10 F GTGGCATTCAAGGAGTACCTC Sigma NA
Primer: h CXCL10 R TGATGGCCTTCGATTCTGGATT Sigma NA
Primer: h CXCL9 F CCAGTAGTGAGAAAGGGTCGC Sigma NA
Primer: h CXCL9 R AGGGCTTGGGGCAAATTGTT Sigma NA
Primer: m CXCL9 F GGAGTTCGAGGAACCCTA Sigma NA
Primer: m CXCL9 R GGGATTTGTAGTAGTGGATCGTGC Sigma NA
Primer: m CCL5 F GCTGCTTTGCCTACCTCTCC Sigma NA
Primer: m CCL5 R TCGAGTGACAAACACGACTGC Sigma NA
Primer: h CCL5 F CCAGCAGTCGTCTTTGTCAC Sigma NA
Primer: h CCL5 R CTCTGGGTTGGCACACACTT Sigma NA
Recombinant DNA
NA
Software and Algorithms
ImageJ NIH Image https://imagej.nih.gov/ij/index.html
Graphpad’s Prism 7.03 software GraphPad https://www.graphpad.com/
R (version3.3.0.) Bioconductor https://www.bioconductor.org/packages/devel/bioc/vignettes/limma/inst/doc/usersguide.pdf
Timer version 2.0 Li et al, 2020 http://timer.cistrome.org/
Morpheus Broad Institute https://software.broadinstitute.org/morpheus/
cBioPortal for Cancer Genomics version 3.6.3 Cerami et al, 2012 https://www.cbioportal.org/
Other
N/A