FIGURE 2.
Histograms of pore diameters, sampled in two Kir6.2 systems (6C3O, 6C3P). Minimum distances for three major constriction sites in Kir6.2 were measured in 5 × 1 μs MD simulations for both systems between two opposing subunits and averaged over the number of simulations, subsequently. Crosses mark the corresponding distances of the initial cryo-EM state before equilibration and production run, measured with the HOLE program. A vertical line is drawn at 6.6 Å, indicating the time-averaged hydration diameter of K+ (Conway 1981). Analogous average minimum-distance values, measured in the G-loop gate (narrowest passage in 3SYA), were associated with conduction in previously published Kir3.2 3SYA simulations (Bernsteiner et al., 2019) (*, gray curve).