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. 2021 Aug 25;3(3):lqab074. doi: 10.1093/nargab/lqab074

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© The Author(s) 2021. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 5. — (A) Base-pairing probability plot of an SAS chimeric transcript (Chimera ID: AA541549). (B) Structural accessibility of the SAS chimera AA541549. Raccess computed the accessibility of segment [a, b] = [x, x+l-1] in the transcript for all positions x with a fixed length of l (Acc.len) = 5, 10, 20. In the figure, access energy ([a, b]) is plotted at (x + l/2). (C) Interaction of SAS chimera AA541549 with its parental mRNA (Gene ID: XM_017015217). The highlighted base-pairs for a given pair of sequences represent the minimal energy of the RNA–RNA interaction that can be formed between the two RNAs at each sequence position.