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. 2021 Aug 11;12:663851. doi: 10.3389/fpls.2021.663851

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Copyright © 2021 Boluk, Arizala, Dobhal, Zhang, Hu, Alvarez and Arif.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Pan- and core-genome analyses among the Dickeya species. Pan- and core-genome plot: (A) The pan and core genome analyses were developed by employing BLAST with a cutoff of 50% identity and 50% coverage of the longest gene. (B) Pan-genome tree: the respective dendrogram illustrates the grouping of species based upon the shared gene families (core genome) defined in the pan- and core-genome analysis. Organisms are marked 1–14; 1, PL65; 2, A5410; 3, MS2; 4, Ech586; 5, EC1 (D. zeae); 6, D. undicola FVG10-MFV-A16; 7, D. aquatica 174/2; 8, D. lacustris S29; 9, D. solani IPO 2222; 10, D. dadantii 3937; 11, D. dianthicola ME23; 12, D. fangzhongdai PA1; 13, D. paradisiaca Ech703; and 14, D. chrysanthemi Ech1591.