TABLE 1.
Selected genomes of Dickeya and Pectobacterium used for comparative and phylogenomic analyses.
| Species | Strain name | NCBI accession number | Location | Host/Source | Isolation year | Replicons (Assembly level) | Genome size (Mb) | GC% |
| Dickeya zeae | EC1* | NZ_CP006929 | China | Oryza sativa | – | 1 contig | 4.53 | 53.4 |
| Dickeya sp. | A5410 | NZ_CP040816 | United States | Ananas comosus | 2007 | 1 contig | 4.78 | 53.5 |
| Dickeya sp. | PL65 | NZ_CP040817 | United States | Colocasia esculenta | 2018 | 1 contig | 4.75 | 53.6 |
| D. zeae | Ech586 | NC_013592 | United States Florida | Philodendron Schott | – | 1 contig | 4.82 | 53.6 |
| D. zeae | MS2 | NZ_CP025799 | China | Musa sp. | 2014 | 1 contig | 4.74 | 53.4 |
| Dickeya aquatica | 174/2T | NZ_LT615367 | United Kingdom | River water | 2012 | 1 contig | 4.5 | 53.6 |
| Dickeya chrysanthemi | Ech1591 | NC_012912 | – | Zea mays | – | 1 contig | 4.81 | 54.5 |
| Dickeya dadantii | 3937 | NC_014500 | France | Saintpaulia ionantha | 1977 | 1 contig | 4.92 | 56.3 |
| Dickeya dianthicola | ME23 | NZ_CP031560 | United States Maine | Solanum tuberosum | 2016 | 1 contig | 4.91 | 55.7 |
| Dickeya fangzhongdai | PA1 | NZ_CP020872 | China | Phalaenopsis sp. | 2011 | 1 contig | 4.98 | 56.9 |
| Dickeya lacustris | S29T | NZ_QNUT01 | France | River water | 2017 | 118 contigs | 4.31 | 53.1 |
| Dickeya paradisiaca | Ech703 | NC_012880 | Australia | S. tuberosum | – | 1 contig | 4.68 | 55 |
| Dickeya solani | IPO 2222T | NZ_CP015137 | Netherlands | S. tuberosum | 2007 | 1 contig | 4.92 | 56.2 |
| Dickeya undicola | FVG10-MFV-A16 | NZ_RJLS00 | France | Fresh water | 2017 | 202 contigs | 4.54 | 54.5 |
| Pectobacterium atrosepticum | 36A | NZ_CP024956 | Belarus | S. tuberosum | 1978 | 1 contig | 4.97 | 51.1 |
Type strains are marked with “T” after the strain name.
The data that are not available are marked with “–”.
*EC1 was Dickeya zeae, but recently, this strain has been reclassified as D. oryzae.