TABLE 1.
Cluster | CCa | STb | CTc | N d | Farm(s) | Pairwise distance (no. of SNPs) |
||
---|---|---|---|---|---|---|---|---|
Mean | Minimum | Maximum | ||||||
C1 | 8 | 8 | 9176 | 8 | A | 1.5 | 0 | 4 |
C2 | 14 | 14 | 9177 | 34 | A | 3.6 | 0 | 12 |
C3 | 14 | 91 | 9178 | 18 | A | 2.6 | 0 | 7 |
C4 | 14 | 91 | 9179 | 8 | A, B | 2 | 0 | 6 |
C5 | 18 | 18 | 9180 | 8 | B | 3.3 | 0 | 8 |
C6 | 18 | 18 | 9181 | 6 | B | 1.7 | 0 | 10 |
C7 | 20 | 20 | 9182 | 32 | C | 2.4 | 0 | 7 |
C8 | 20 | 20 | 9189 | 5 | B | 3.5 | 0 | 9 |
C9 | 20 | 20 | 9183 | 6 | A | 3.9 | 0 | 10 |
C10 | 20 | 20 | 9184 | 5 | B | 2.4 | 0 | 6 |
C11 | 20 | 20 | 9185 | 9 | C | 5.8 | 0 | 11 |
C12 | 20 | 20 | 9186 | 4 | B | 1.5 | 0 | 6 |
C13 | 37 | 37 | 9187 | 20 | A | 2.6 | 0 | 7 |
C14 | 37 | 37 | 9188, 9205 | 7 | A | 2.2 | 0 | 6 |
All clusters | 2.8 | 0 | 8 |
CC, clonal complex.
ST, multilocus sequence typing (MLST) profile.
CT, core genome multilocus sequence typing (cgMLST) profile.
Number of isolates in the persistent cluster.