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. 2021 Jul 26;6(9):1150–1162. doi: 10.1038/s41564-021-00941-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 9 — a, Constrained PCoA of Bray-Curtis dissimilarity (constrained by all biological factors and conditioned by all technical variables; n = 98; variance explained 24.6%, P = 0.001) of root samples from L. japonicus wild type Gifu, Ljfls2 mutant, A. thaliana wild type Col-0, Atfls2 mutant, and Atbbc mutant inoculated and grown with the mixed SynCom LjAt-SC1 (exp. G), and of the corresponding bacterial input communities. b, Aggregated relative abundance of the 16 Lj-derived and the 16 At-derived strains in the roots of Lotus and Arabidopsis plants. n = 21 for Gifu, n = 16 for Col-0, n = 20 for Ljfls2 and Atfls2, n = 18 for Atbbc. c, Constrained PCoA of Bray-Curtis dissimilarity (constrained by all biological factors and conditioned by all technical variables; n = 64; variance explained 42.2%, P = 0.001) of soil and root samples from Gifu, Col-0, and Atdeps mutant inoculated and grown with the mixed SynCom LjAt-SC3 (exp. H). d, Aggregated relative abundance of the 16 Lj-derived and the 16 At-derived strains in the roots of Lotus and Arabidopsis plants. n = 14 for Gifu, n = 20 for Col-0 and Atdeps. n refers to biologically independent samples.