Table 2.
General population microbiome module summary and associations with smoking.
| Module ID (Colour) | Number of OTUs | Total Abundance | Overall% | Cum% | Smoking R | Smoking P | Module description |
|---|---|---|---|---|---|---|---|
| Prevotella.1 (Turquoise) | 2218 | 18,636,985 | 42.69 | 42.69 | Commensal carpet: Veilonella, Prevotella, Actinomyces. Veillonella and Atopobium hubs | ||
| Streptococcus.2 (Blue) | 472 | 9433,313 | 21.61 | 64.30 | −0.13 | 2.E-02 | Streptococcus and Haemophilus prevalent. Lactobacilliae and Gemella hubs |
| Streptococcus.1 (Magenta) | 126 | 8480,289 | 19.43 | 83.73 | 0.18 | 8.E-04 | Streptococci dominated |
| Fusobacteria (Brown) | 583 | 3099,110 | 7.10 | 90.83 | −0.26 | 4.E-08 | Fusobacteria and Leptotrichia hubs |
| Neisseria (Green) |
204 | 2969,651 | 6.80 | 97.63 | −0.35 | 1.E-14 | Neisseria dominated, prevalent Capnocytophagia |
| Prevotella.2 (Black) |
136 | 387,098 | 0.89 | 98.52 | 0.15 | 4.E-03 | Prevotella, Parvimonas, Streptococci, Porphryomonas |
| Veillonella (Cyan) |
50 | 173,186 | 0.40 | 98.92 | 0.17 | 1.E-03 | Veillonella |
| Prevotella.3 (Purple) | 71 | 105,630 | 0.24 | 99.16 | Prevotella dominated | ||
| Indeterminate (Tan) |
55 | 101,284 | 0.23 | 99.39 | 0.15 | 4.E-03 | Prevotella and Treponema |
| Porphymonas (Salmon) | 50 | 89,951 | 0.21 | 99.60 | 0.15 | 6.E-03 | Porphyromonas and Prevotella |
| Bifidobacteria (Pink) | 134 | 86,562 | 0.20 | 99.80 | 0.32 | 8.E-13 | Bifidobacterium hubs |
| Peptococcus (Midnightblue) | 44 | 79,920 | 0.18 | 99.98 | −0.16 | 2.E-03 | Peptococcus |
| Contaminants (GreenYellow) |
62 | 8869 | 0.02 | 100.00 | −0.12 | 3.E-02 | Herbaspirillum: potential contaminants |
| Unconnected (Grey) | 13 | 451 | 0.00 | Unconnected OTUs: potential contaminants |