Table 1.
Interactome browsers for retrieving protein–protein interactions data.
| No. | Name and Ref. | Site | Notes |
|---|---|---|---|
| 1 | Funcoup 5.0 [20] | http://FunCoup.sbc.su.se (accessed on 15 March 2021) | Evidence type—protein interactions, LLR Score > 2, confidence > 0.9, network: “PPI”, “Complex” |
| 2 | Mentha [21] | https://mentha.uniroma2.it/ (accessed on 15 March 2021) | Evidence type: physical interactions |
| 3 | CORUM [22] | http://mips.helmholtz-muenchen.de/corum/ (accessed on 15 March 2021) | - |
| 4 | ExoCarta [23] | http://www.exocarta.org/ (accessed on 15 March 2021) | - |
| 5 | APID [24] | http://apid.dep.usal.es (accessed on 15 March 2021) | Methods (binary, indirect), |
| ≥1 publication | |||
| 6 | MINT [25] | https://mint.bio.uniroma2.it/ (accessed on 16 March 2021) | Interaction type: association, physical association |
| 7 | SIGNOR 2.0 [26] | https://signor.uniroma2.it/ (accessed on 16 March 2021) | - |
| 8 | HuRI [27] | http://www.interactome-atlas.org/ (accessed on 16 March 2021) | - |
| 9 | IID [28] | http://iid.ophid.utoronto.ca (accessed on 16 March 2021) | Interaction type: experimental |
| 10 | Bioplex Explorer 3.0 [29] | https://bioplex.hms.harvard.edu/explorer/ (accessed on 16 March 2021) | Interaction probability > 0.9 |
| 11 | Wiki-Pi [30] | https://hagrid.dbmi.pitt.edu/wiki-pi/ (accessed on 16 March 2021) | - |
| 12 | HIPPIE 2.0 [31] | http://cbdm-01.zdv.uni-mainz.de/~mschaefer/hippie/ (accessed on 16 March 2021) | Score > 0.6 |
| 13 | HINT [32] | http://hint.yulab.org/ (accessed on 16 March 2021) | Binary interaction |