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. 2021 Mar 26;70(3):272–283. doi: 10.1538/expanim.21-0017

Table 1. Genetic candidate regions of Stmm loci and other cancer susceptibility loci in the vicinity.

Locus name Chromosome No. Genetic marker rs No. Candidate region# (bp) Tumor category Effect of p53 Other cancer susceptibility QTLs in the visinity References
Stmm1a 7 D7Mit351–D7Mit149 96,776,254–99,188,960 Early papilloma Independent - [57], Okumura et al. (Unpablished data)
Stmm1b 7 D7Mit53–D7Mit253 110,583,818–115,356,689 Early-middle papilloma Independent - [57, 58, 59]
Stmm2 7 D7Mit255–D7Mit259 124,705,587–144,566,894 Early-middle papilloma Independent Skts2 [25, 26, 57, 58]
Stmm3 4 D4Mit26–D4Mit166 88,535,066–93,366,888 Late papilloma, SCC Dependent Skts7,Skts-fp1 [22, 25, 57, 60, 61]
Stmm4 6 D6SNP511–D6SNP511512 rs30149679–rs38226370 55,547,013–108,360,689 Middle papilloma Independent Skts11 [25, 57]
Stmm5 5 D5SNP12–D5SNP6 rs13478361–rs3023057 83,810,839–126,154,436 Middle-late papilloma, SCC Dependent Hcs5,Thyls2 [57, 62, 63]
Stmm6 3 D3SNP519* rs46831546 45,778,132 ± 10,000,000 Middle papilloma Unknown - [57]
Stmm7 3 D3SNP504* rs30553837 111,903,098 ± 20,000,000 Middle papilloma Unknown Raml2 [57, 64]
Stmm8 12 D12SNP12* rs3682985 70,353,327 ± 20,000,000 Middle papilloma Unknown Par3 [57, 65]
Stmm9 13 D13SNP12* rs3698421 71,839,279 ± 20,000,000 Middle papilloma Unknown Pas10 [57, 66]
Stmm10 17 D17SNP19–D17SNP510 rs3705342–N.D. 68,392,183–94,100,159 Middle papilloma Unknown Skts10 [25, 57]
Stmm11 11 D11SNP8* rs3023316 117,028,591 ± 15,000,000 Middle-late papilloma, SCC Unknown Par1 [57, 67, 68]
Stmm12 1 D1SNP11–D1SNP512 rs3688428–rs38697954 4,137,358–32,741,433 Early papilloma Unknown Lscc1 [57, 69]

Early papilloma, tumor diameter of <2 mm; middle papilloma, tumor diameter of 2–6 mm; late papilloma, tumor diameter of >6 mm; SCC, squamous cell carcinoma; N.D., not detected. *Linkage peak. #Candidate regions are based on MGI data.