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. Author manuscript; available in PMC: 2021 Aug 27.
Published in final edited form as: Biochemistry. 2012 Feb 3;51(6):1188–1198. doi: 10.1021/bi200854q

Figure 3.

Figure 3.

The nUBP domain. A) Cutaway view of an electrostatic surface representation (−70 to +70 kT/e) of the USP5 nUBP, cUBP, and HDAC6 UBP. Bound ubiquitin tails in cUBP and HDAC6 UBP are shown in yellow stick format. A close-up view of the corresponding ligand binding cleft is shown below the surface representation. Prominent UBP side chains are labeled and shown in stick format and their van der Waals radii are shown as dots. B) The Catalytic-nUBP interface is shown stereoscopically, with labeled domains as ribbons and interacting, labeled residues in stick format. Hydrogen and ionic bonds are shown as black dashed lines.