Table 1.
Identification of the RDUF genes in G. arboretum, G. raimondii, G. hirsutum, and G. barbadense. Abbreviations: chlo, chloroplast; cyto, cytoplasm; mito, mitochondrion; nucl, nucleus.
| Name | Gene Locus ID | Nucleic Acid | Amino Acid | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Location | CDS (bp) | Exons | Size (aa) | Mw (Da) | pI | Formula | Subcellular Location | ||
| GaRDUF1 | Ga01G2247.1 | Chr01: 104114537-104114537 | 1095 | 1 | 364 | 40,145.64 | 6.72 | C1709H2699N529O553S20 | cyto: 5, nucl: 3, chlo: 2 |
| GaRDUF2 | Ga04G0720.1 | Chr04: 15879489-15880598 | 1110 | 1 | 369 | 41,080.80 | 8.36 | C1780H2753N547O545S17 | nucl: 8, mito: 4, chlo: 1 |
| GaRDUF3 | Ga07G1079.1 | Chr07: 15730492-15731585 | 1023 | 2 | 340 | 38,340.47 | 5.96 | C1655H2554N498O525S16 | chlo: 6, mito: 4, nucl: 2 |
| GaRDUF4 | Ga09G1752.1 | Chr09: 75411415-75412479 | 1065 | 1 | 354 | 39,662.52 | 9.27 | C1720H2690N536O517S16 | nucl: 7, chlo: 3, mito: 3 |
| GaRDUF5 | Ga10G0274.1 | Chr10: 3699993-3701000 | 1008 | 1 | 335 | 36,635.1 | 6.15 | C1588H2470N474O489S19 | chlo: 10, nucl: 2, cyto: 1 |
| GaRDUF6 | Ga13G0217.1 | Chr13: 2143604-2144689 | 1086 | 1 | 361 | 39,945.89 | 7.03 | C1729H2687N519O529S23 | nucl: 14 |
| GrRDUF1 | Gorai.001G111900.1 | Chr01: 13043565-13045611 | 1099 | 1 | 361 | 40,055.51 | 5.77 | C1728H2685N513O552S18 | chlo: 5, mito: 5, nucl: 1 |
| GrRDUF2 | Gorai.003G129300.1 | Chr03: 38196500-38198583 | 1114 | 1 | 366 | 40,318.81 | 6.72 | C1716H2710N530O557S20 | nucl: 4, cyto: 3, mito: 3 |
| GrRDUF3 | Gorai.006G171100.1 | Chr06: 43050323-43052612 | 1078 | 1 | 354 | 39,714.48 | 9.02 | C1718H2682N534O522S17 | nucl: 10, chlo: 2, mito: 2 |
| GrRDUF4 | Gorai.011G267000.1 | Chr11: 59881340-59882767 | 953 | 2 | 313 | 34,156.21 | 8.39 | C1485H2298N448O453S15 | chlo: 9, nucl: 2, mito: 2 |
| GrRDUF5 | Gorai.012G071400.1 | Chr12: 10539979-10541968 | 1011 | 1 | 332 | 36,698.02 | 7.59 | C1580H2471N491O488S17 | nucl: 8, mito: 3, chlo: 2 |
| GrRDUF6 | Gorai.012G105100.1 | Chr12: 23596133-23598256 | 1123 | 1 | 369 | 41,122.88 | 8.36 | C1783H2759N547O545S17 | nucl: 8, mito: 4, chlo: 2 |
| GrRDUF7 | Gorai.013G021800.1 | Chr13: 1532332-1533783 | 1102 | 1 | 362 | 40,120.10 | 8.02 | C1733H2701N527O529S23 | nucl: 14 |
| GhRDUF1A | GH_A03G0566 | A03: 8775627-8776721 | 1116 | 1 | 364 | 40,144.7 | 6.72 | C1711H2704N528O552S20 | cyto: 5, nucl: 3, chlo: 2 |
| GhRDUF2A | GH_A04G1023 | A04: 72823528-72824637 | 1132 | 1 | 369 | 41,114.82 | 8.36 | C1783H2751N547O545S17 | nucl: 9, mito: 4, chlo: 1 |
| GhRDUF3A | GH_A05G3679 | A05: 96863898-96864839 | 960 | 1 | 313 | 34,110.2 | 7.59 | C1470H2308N450O457S16 | nucl: 7, mito: 4, chlo: 2 |
| GhRDUF4A | GH_A07G1092 | A07: 16689279-16690247 | 988 | 1 | 322 | 36,130.2 | 5.25 | C1566H2418N456O497S17 | chlo: 6, mito: 4, nucl: 2 |
| GhRDUF5A | GH_A09G1709 | A09: 74061366-74062430 | 1086 | 1 | 354 | 39,765.64 | 9.25 | C1727H2695N537O517S16 | mito: 7, nucl: 3.5, chlo: 3 |
| GhRDUF6A | GH_A10G2448 | A10: 111936421-111937428 | 1028 | 1 | 335 | 36,635.1 | 6.15 | C1588H2470N474O489S19 | chlo: 10, nucl: 2, cyto: 1 |
| GhRDUF7A | GH_A13G0199 | A13: 2147580-2148665 | 1107 | 1 | 361 | 39,948.85 | 7.03 | C1727H2684N520O530S23 | nucl: 14 |
| GhRDUF1D | GH_D03G1398 | D03: 45757090-45758175 | 1107 | 1 | 361 | 39,809.38 | 6.72 | C1696H2687N525O546S20 | cyto: 4, chlo: 3, nucl: 3 |
| GhRDUF2D | GH_D04G0664 | D04: 11134024-11135037 | 1034 | 1 | 337 | 37,207.58 | 8.34 | C1602H2506N498O495S17 | nucl: 9, mito: 3, chlo: 2 |
| GhRDUF3D | GH_D04G1354 | D04: 44739659-44740768 | 1132 | 1 | 369 | 41,202.03 | 8.56 | C1788H2768N550O543S17 | nucl: 9, mito: 3, chlo: 2 |
| GhRDUF4D | GH_D07G1077 | D07: 13116176-13117261 | 1107 | 1 | 361 | 40,221.74 | 5.82 | C1737H2699N515O553S18 | chlo: 6, mito: 4, nucl: 2 |
| GhRDUF5D | GH_D09G1658 | D09: 43682720-43683784 | 1086 | 1 | 354 | 39,723.49 | 8.89 | C1720H2681N533O522S17 | nucl: 9, mito: 3, chlo: 1 |
| GhRDUF6D | GH_D10G2556 | D10: 64049541-64050551 | 1031 | 1 | 336 | 36,686.15 | 6.89 | C1590H2471N477O488S19 | chlo: 8, nucl: 3, mito: 2 |
| GhRDUF7D | GH_D13G0196 | D13: 1703107-1704195 | 1110 | 1 | 362 | 40,142.16 | 8.02 | C1735H2703N529O527S23 | nucl: 14 |
| GbRDUF1A | GB_A03G0554 | A03: 8482495-8483589 | 1116 | 1 | 364 | 40,144.7 | 6.72 | C1711H2704N528O552S20 | cyto: 5, nucl: 3, chlo: 2 |
| GbRDUF2A | GB_A04G1063 | A04: 67240547-67241656 | 1132 | 1 | 369 | 41,080.8 | 8.36 | C1780H2753N547O545S17 | nucl: 8, mito: 4, chlo: 1 |
| GbRDUF3A | GB_A05G3770 | A05: 94125157-94126098 | 960 | 1 | 313 | 34,134.26 | 7.57 | C1474H2312N448O457S16 | nucl: 6, mito: 5, chlo: 2 |
| GbRDUF4A | GB_A07G1079 | A07: 17016234-17017202 | 988 | 1 | 322 | 36,188.24 | 5.17 | C1568H2420N456O499S17 | chlo: 6, mito: 4, nucl: 2 |
| GbRDUF5A | GB_A09G1832 | A09: 70138025-70139089 | 1086 | 1 | 354 | 39,716.57 | 9.27 | C1722H2692N538O517S16 | mito: 7, nucl: 3.5, chlo: 3 |
| GbRDUF6A | GB_A10G2617 | A10: 108379933-108380940 | 1028 | 1 | 335 | 36,587.06 | 6.15 | C1584H2470N474O489S19 | chlo: 9, nucl: 2, mito: 2 |
| GbRDUF7A | GB_A13G0200 | A13: 2045827-2048345 | 1312 | 2 | 428 | 46,919.93 | 8.38 | C2038H3185N603O622S26 | nucl: 14 |
| GbRDUF1D | GB_D03G1418 | D03: 45690505-45691611 | 1129 | 1 | 368 | 40,430.98 | 6.72 | C1719H2726N532O559S20 | nucl: 4, chlo: 3, cyto: 3 |
| GbRDUF2D | GB_D04G0687 | D04: 10848147-10850667 | 1049 | 2 | 342 | 37,749.2 | 8.05 | C1625H2541N503O503S18 | nucl: 9, mito: 3, chlo: 2 |
| GbRDUF3D | GB_D04G1434 | D04: 45218042-45219151 | 1132 | 1 | 369 | 41,132.92 | 8.36 | C1785H2761N547O544S17 | nucl: 8, mito: 4, chlo: 2 |
| GbRDUF4D | GB_D07G1081 | D07: 13412269-13413354 | 1107 | 1 | 361 | 40,182.70 | 5.89 | C1734H2698N516O552S18 | chlo: 5, mito: 5, nucl: 1 |
| GbRDUF5D | GB_D09G1672 | D09: 45246636-45247700 | 1086 | 1 | 354 | 39,735.54 | 8.89 | C1722H2685N533O521S17 | nucl: 9, mito: 3, chlo: 2 |
| GbRDUF6D | GB_D10G2571 | D10: 63188105-63189115 | 1031 | 1 | 336 | 36,658.1 | 6.46 | C1589H2467N475O489S19 | chlo: 8, mito: 3, nucl: 2 |
| GbRDUF7D | GB_D13G0189 | D13: 1578513-1579601 | 1110 | 1 | 362 | 40,112.13 | 8.03 | C1734H2701N529O526S23 | nucl: 14 |