Table 1.
Statistics of sequencing data for each sample.
| Sample ID * | Clean Reads | Total Reads |
GC (%) | Q30 (%) | Total SNP | Heter. Ratio (%) | SLAF Number | Total Depth |
Average Depth |
|---|---|---|---|---|---|---|---|---|---|
| HEBV | 2.66 Gb | 10,310,004 | 42.90 | 93.32 | 149.05 | 35.92 | 383.53 | 9,480,575 | 24.72 |
| LEBV | 2.73 Gb | 10,571,785 | 42.86 | 93.21 | 149.05 | 37.72 | 384.63 | 9,726,388 | 25.29 |
| Control | Rice | 1,291,422 | 41.60 | 93.28 |
* Sample ID: project sample number; HEBV, LEBV: high and low estimated breeding value groups, respectively; GC (%): the percentage of G and C bases in the total bases in the sequencing results; Q30 (%): the percentage of bases with a sequencing quality value greater than or equal to 30; Heter. ratio (%): single nucleotide polymorphism (SNP) heterozygosity in the sample; specific locus amplified fragment (SLAF) number: the number of SLAF tags contained in the sample; total depth: the total sequencing depth of the sample in the SLAF tags, that is, the total number of reads; and average depth: the average number of sequencing reads of the sample on each SLAF.