Table 4.
The diet-dependent expression of annotated collagenases.
| Comparison of Differential Gene Expression |
|||||
|---|---|---|---|---|---|
| ORF (Contig Name) | kf↔kr | kf↔kf2kr | kr↔kr2kf | UniProt Entry | Pfam Domain |
| DN25_c0_g1_i12 | + | + | + | collagenase | trypsin (c) |
| DN25_c0_g1_i18 | + | + | n.d. | collagenase | trypsin (p) |
| DN3115_c0_g1_i8 | + | + | n.d. | collagenase | trypsin (c) |
| DN2565_c0_g1_i9 | n.d. | + | + | collagenase | trypsin (f) |
| DN2565_c0_g1_i10 | n.d. | + | + | collagenase | trypsin (c) |
| DN25_c0_g1_i3 | n.d. | + | n.d. | collagenase | trypsin (c) |
| DN1221_c0_g2_i2 | n.d. | + | n.d. | collagenase | trypsin (c) |
Abbreviations: c = complete (domain coverage ≥90%); p = partial (query coverage ≥90%); f = fragment (all others); kf = keratin-free diet; kr = keratin-rich diet; kf2kr: keratin-free switched to keratin-rich diet; kr2kf = keratin-rich switched to keratin-free diet; n.d. = not differentially expressed. The + symbol indicates keratin-associated expression. Bidirectional arrows (↔) show comparisons in each analysis.