| Cmm | Clavibacter michiganensis ssp. michiganensis |
| RNA-seq | RNA-Sequencing |
| FPKM | Fragments per Kilobase Million |
| DEGs | Differentially Expressed Genes |
| GO | Gene Ontology |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| JA | jasmonic acid |
| SA | salicylic acid |
| ABA | abscisic acid |
| MAMP | Microbe-associated molecular patterns |
| MTI | MAMP-Triggered Immunity |
| ETI | Effector-Triggered Immunity |
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