| VapC | Virulence associated protein C |
| TrmB | tRNA (guanine-N(7)-)-methyltransferase |
| TrmD | tRNA (guanine-N(1)-)-methyltransferase |
| TrmJ | tRNA (cytidine/uridine-2′-O-)-methyltransferase |
| IscS | iron-sulfur cluster assembly gene |
| MnmA | tRNA-specific 2-thiouridylase |
| TtcA | tRNA-cytidine(32) 2-sulfurtransferase |
| ThiI | tRNA sulfurtransferase |
| TtuA | RNA-5-methyluridine(54) 2-sulfurtransferase |
| TsaB, TsaE | tRNA threonylcarbamoyladenosine biosynthesis proteins B and E |
| TmcA | tRNA(Met) cytidine acetyltransferase |
| TadA | tRNA-specific adenosine deaminase |
| MiaA | tRNA dimethylallyltransferase |
| TrmL | tRNA (cytidine(34)-2′-O)-methyltransferase |
| TusA | Sulfur transfer protein |
| ALKB | alkane hydroxylase |
| ALKBH1 | AlkB homolog 1 |
| GidA | glucose-inhibited division protein A |
| MnmE | tRNA modification GTPase |
| SpeB | Streptococcus pyrogenic exotoxin B |
| VirF | virulence regulon transcriptional activator VirF |
| DosR | dormancy survival regulator |
| katA, katB | catalase A and B |
| DnaA | chromosomal replication initiator protein |
| LolB | lipoprotein localization protein |
| OmpA | outer membrane protein A |