Genetic variability of the L donovani clones: (a) Number of SNV positions that are shared between exactly 1 to 12 clones and the polyclonal population. The Y and X axis represent, respectively, the number of variants and the exact number of isolates in which the variant position was observed. A total of 84% of the SNV positions were present in all clones and the non-cloned population. (b) Number of SNPs and indels in each chromosome. (c) Genetic diversity (π) in chromosomes 6, 12, 31 and 34 estimated using 50 kb windows. The Y and X axis represent, respectively, genetic diversity and chromosomal position. SNVs, indels and SNPs are represented in red, blue and green, respectively.