Table 2.
The value of RD for the T–O–R relationship and the value of the K parameter, which determines the influence of a nonaqueous environment on protein folding, are given. The RD values for the M–O–T relationship are also shown, indicating the effect of approximating the M distribution to the O distribution at the reference T distribution. For the selected proteins, a set of parameters was given for the distinguished structural parts, including, in particular, beta-barrels.
PDB-ID | Protein Characteristics |
RD
T – O – R |
K |
RD
M – O – T |
Length (aa) |
---|---|---|---|---|---|
HIGH RESISTANCE | |||||
2LHF | protein H (OprH) | 0.472 | 0.2 | 0.404 | 178 |
β-barrel | 0.603 | 0.4 | 0.377 | 74 | |
2JMM | pr. A (OmpA)–modif. | 0.472 | 0.3 | 0.386 | 156 |
β-barrel | 0.461 | 0.2 | 0.486 | 84 | |
DIFFERENT EXTERNAL CONDITIONS | |||||
6QWR | Oil transport–lipid | 0.556 | 0.4 | 0.384 | 211 |
β-barrel | AlkL | 0.537 | 0.4 | 0.166 | 110 |
Loops | 0.599 | 0.7 | 0.213 | 101 | |
6QAM | 0.575 | 0.5 | 0.365 | 211 | |
β-barrel | Oil transport–detergent | 0.582 | 0.4 | 0.415 | 75 |
Loops | AlkL | 0.676 | 1.2 | 0.318 | 136 |
HIGHER DIAMETER BARREL | |||||
1QJP | 0.558 | 0.4 | 0.382 | 137 | |
β-barrel | 0.643 | 0.6 | 0.349 | 107 | |
6FSU | 0.664 | 0.9 | 0.310 | 388 | |
β-barrel | 0.718 | 0.9 | 0.281 | 197 | |
4K3C | 0.699 | 1.2 | 0.291 | 532 | |
β-barrel | 0.726 | 1.3 | 0.273 | 195 | |
4N75 | 0.727 | 1.2 | 0.261 | 379 | |
β-barrel | 0.743 | 1.3 | 0.255 | 191 | |
DIFFERENT RESISTANCE | |||||
4RL9 | Small mol. transport | 0.745 | 1.2 | 0.239 | 205 |
β-barrel | 0.818 | 1.1 | 0.180 | 76 | |
β-sheet | 0.736 | 1.2 | 0.262 | 46 | |
Helix | 0.448 | 0.5 | 0.448 | 19 | |
4RLB | Small mol. Transport | 0.741 | 1.3 | 0.245 | 213 |
β-barrel | 0.801 | 1.1 | 0.196 | 78 | |
β-sheet | 0.806 | 1.8 | 0.193 | 97 | |
Helix | 0.651 | 1.8 | 0.348 | 21 | |
4RLC | Small mol. Transport | 0.503 | 0.3 | 0.409 | 135 |
β-barrel | 0.503 | 0.3 | 0.409 | 135 | |
AUTOTRANSPORTER | |||||
3AEH | autotransporter | 0.707 | 1.3 | 0.289 | 277 |
β-barrel | 0.644 | 0.7 | 0.336 | 234 | |
2QOM | autotransporter | 0.696 | 1.4 | 0.298 | 265 |
β-barrel | 0.641 | 0.8 | 0.346 | 186 | |
EFFLUX PUMP | |||||
5AZO | efflux pump | 0.825 | 1.6 | 0.169 | 444 |
Helices | 0.788 | 1.2 | 0.206 | 314 | |
β-sheet | 0.837 | 1.5 | 0.154 | 57 |