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. 2021 Jul 30;11(8):580. doi: 10.3390/membranes11080580

Table 2.

The value of RD for the TOR relationship and the value of the K parameter, which determines the influence of a nonaqueous environment on protein folding, are given. The RD values for the MOT relationship are also shown, indicating the effect of approximating the M distribution to the O distribution at the reference T distribution. For the selected proteins, a set of parameters was given for the distinguished structural parts, including, in particular, beta-barrels.

PDB-ID Protein
Characteristics
RD
T O R
K RD
M O T
Length (aa)
HIGH RESISTANCE
2LHF protein H (OprH) 0.472 0.2 0.404 178
β-barrel 0.603 0.4 0.377 74
2JMM pr. A (OmpA)–modif. 0.472 0.3 0.386 156
β-barrel 0.461 0.2 0.486 84
DIFFERENT EXTERNAL CONDITIONS
6QWR Oil transport–lipid 0.556 0.4 0.384 211
β-barrel AlkL 0.537 0.4 0.166 110
Loops 0.599 0.7 0.213 101
6QAM 0.575 0.5 0.365 211
β-barrel Oil transport–detergent 0.582 0.4 0.415 75
Loops AlkL 0.676 1.2 0.318 136
HIGHER DIAMETER BARREL
1QJP 0.558 0.4 0.382 137
β-barrel 0.643 0.6 0.349 107
6FSU 0.664 0.9 0.310 388
β-barrel 0.718 0.9 0.281 197
4K3C 0.699 1.2 0.291 532
β-barrel 0.726 1.3 0.273 195
4N75 0.727 1.2 0.261 379
β-barrel 0.743 1.3 0.255 191
DIFFERENT RESISTANCE
4RL9 Small mol. transport 0.745 1.2 0.239 205
β-barrel 0.818 1.1 0.180 76
β-sheet 0.736 1.2 0.262 46
Helix 0.448 0.5 0.448 19
4RLB Small mol. Transport 0.741 1.3 0.245 213
β-barrel 0.801 1.1 0.196 78
β-sheet 0.806 1.8 0.193 97
Helix 0.651 1.8 0.348 21
4RLC Small mol. Transport 0.503 0.3 0.409 135
β-barrel 0.503 0.3 0.409 135
AUTOTRANSPORTER
3AEH autotransporter 0.707 1.3 0.289 277
β-barrel 0.644 0.7 0.336 234
2QOM autotransporter 0.696 1.4 0.298 265
β-barrel 0.641 0.8 0.346 186
EFFLUX PUMP
5AZO efflux pump 0.825 1.6 0.169 444
Helices 0.788 1.2 0.206 314
β-sheet 0.837 1.5 0.154 57