Table 2.

Viral proteins identified by proteomics in two tomato-derived nanovesicles samples (S1 and S2) and separated by gradient ultracentrifugation into fractions. * gUC fraction(s) where the viral protein(s) was (were) highly expressed based on protein ranking reported in Supplementary Materials Table S1.

Name of the Virus	Genus of the Virus	Viral Characteristics	Sample	gUC Fraction(s) *	Name of Viral Protein(s) Identified	UniProt Accession No.	Coverage % of Viral Protein(s) Identified
Tomato brown rugose fruit virus (ToBRFV)	Tobamovirus	Single-stranded RNA rod-shaped particles of 300 nm in length and 17 nm in diameter [31]	S1	4 7 9	Capsid protein	A0A0S2SZX3	55.3 54.7 55.4
Tomato mosaic virus (ToMV)	Tobamovirus	Single-stranded RNA rod shaped structure, about 300 nm length and 18 nm radius [27]	S1	4	Capsid protein	Q83482	6.4
Tomato mottle mosaic virus (ToMMV)	Tobamovirus	Single-stranded RNA rod-shaped virus particles 300 nm in length [28,29]	S1	7	Capsid protein	T1WEZ3	5.7
Tomato spotted wilt virus (TSWV)	Orthotospovirus	Single-stranded RNA roughly spherical shaped with a diameter 80–120 nm and density of 1.207 g/mL [34]	S2	B2	Nucleoprotein	O55648	58.1
					NSs non-structural protein	E1Y5V2	19.9
					Nucleocapsid protein	A0A0N9H8W3	56.7
					Putative movement protein	A0A097PIF5	30.1
Potato virus Y (PVY)	Potyvirus	Single-stranded RNA, a filamentous, flexuous form, with a length of 730 nm and a diameter of 12 nm [53,54]	S2	B1	Putative coat protein	A0A0K2K0B0	18.3
				B2	Genome polyprotein	P18247	9.3
Southern tomato virus (STV)	Amalgavirus	Double-stranded RNA, shape and size NA [55]	S2	B2	Putative coat protein	A0A0K2K0B0	18.3