Table 1.
Type of Fingerprints 1 |
Number of Identified Pairs (Actives) 2 |
% of Identified Pairs (Actives) 3 |
Number of Identified Pairs (Inactives) 2 |
% of Identified Pairs (Inactives) 3 |
---|---|---|---|---|
MACCSfp | 1859 | 0.5 | 27,604 | 0.1 |
ECFP4fp | 159,125 | 38.8 | 13,460,261 | 30.8 |
AtomPairsfp | 9093 | 2.2 | 488,407 | 1.1 |
TopologicalTorsionfp | 42,477 | 10.4 | 2,670,815 | 6.1 |
1 Similarity thresholds were taken from [45] for MACCS and ECFP4, and from [60] for AtomPairs and TopologicalTorsion fingerprints. 2 The total numbers of active and inactive compounds considered in the analyses are 905 and 47,246, respectively. 3 The total number of comparisons performed by considering only active compounds are 409,965, which became 43,733,220 by including also inactive ligands.