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. 2021 Aug 18;14(8):812. doi: 10.3390/ph14080812

Table 3.

Selected host–guest interactions in the β-CD–PRT and β-CD–MPL inclusion complexes deduced from X-ray analysis and DFT full-geometry optimization (Å, °).

Interaction a D–H H···A D···A ∠(DHA) Interaction a D–H H···A D···A ∠(DHA)
X-ray DFT e
β-CD–PRT HCl (1) β-CD–PRT base
N5’P–H1···O21 i,b 0.89 2.41 3.087(10) 133.1 C52–H···Cg2 c 1.10 3.75 4.80 162.2
N5’P–H1···O31 i 0.89 2.06 2.856(11) 148.6 C55–H···Cg2 1.10 4.61 3.56 161.6
N5’P–H1···O21 i 0.89 2.41 3.087(10) 133.1 C31–H···Cg1 c 1.10 4.49 3.46 157.1
C51–H···Cg2 c 0.98 3.69 4.461 137.8
C55–H···Cg2 0.98 3.39 4.239 146.3
C32–H···Cg1 0.98 3.21 4.135 158.9
β-CD–MPL HCl (2) β-CD–MPL base
O61–H···N5’M ii,b 0.82 2.44 3.159(12) 146.4 C51–H···Cg1 c 1.10 3.93 4.98 160.7
N5’M–H1···O52 iii 0.89 2.50 3.141(8) 129.2 C31–H···Cg2 c 1.10 3.37 4.30 143.5
N5’M–H1···O62 iii 0.89 2.10 2.930(11) 155.7
N5’M–H2···O61 iii 0.89 2.60 3.159(12) 121.7
C51–H···Cg1 d 0.98 3.577 4.515 161.1
C55–H···Cg1 0.98 3.843 4.782 161.4
C31–H···Cg2 0.98 3.018 3.903 150.9
O21–H···Cg2 0.82 4.394 4.499 92.1
O37–H···Cg2 0.82 3.930 4.520 132.0

a For full lists of intermolecular interactions, see Table S4, Table S5 (X-ray), and Table S6 (DFT). b Symmetry-related molecules with equivalent positions: (i)x + 1, y − 0.5, −z + 2; (ii)x + 1, y − 0.5, −z + 1.5; (iii)x + 1, y + 0.5, −z + 1.5. c PRT aromatic centroids: Cg1 = A-ring (C1P−C2P−C3P−C4P−C13P−C12P), Cg2 = B-ring (C6P–C7P–C8P–C9P–C15P–C14P). d MPL aromatic centroids: Cg1 = A-ring (C1M−C2M−C3M−C4M−C13M−C12M), Cg2 = B-ring (C6M−C7M−C8M−C9M−C15M−C14M). e For stabilization and interaction energies, see Table S7.