Figure 2. Detection of SARS-CoV-2 lineages under different genomic surveillance scenarios.

(A) The probability of detecting at least one genome of a rare lineage under different sequencing regimes. (B) Relative importance of decreasing genome sequencing turnaround time (TAT) versus increasing sequencing percentage, measured as probability that a lineage found in simulated datasets was detected before it had reached 100 cases (described in Fig. S6). (C-G) Probability of lineage detection considering TATs of 7, 14, 21, 28 and 35 days.