TABLE 1.
Percent amino acid identity of vhp in 30 clinical S. aureus isolates
Strain name | STa | vhp isoformsb | Protein IDc | CAI80 435.1d | ANI73 772.1d | AGO2 9166.1d | ADL2 2693.1d | CCG1 5434.1d | ADI97 346.1d | BAB9 4633.1d | AGU6 0934.1d | AMV8 4570.1d | BAB4 1978.1d | BAF7 7693.1d | ABR5 1687.1d | ADC3 6980.1d | AQD1 8902.1d | CCJ10 585.1d | CAG3 9854.1d | ADQ7 7850.1d | AIO20 462.1d | CRL3 3498.1d | AFH6 9102.1d | ABD2 9944.1d | AEW6 4856.1d | ABD2 1761.1d | AAW3 6414.1d | ELP41 198.1d | EJE56 573.1d | CBI48 744.1d | AEV7 7849.1d | ALQ9 9050.1d | AGU5 4604.1d |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
RF122 | 151 | vhpA' | CAI80435.1 | 100e | 96.45e | 83.43e | 85.8e | 84.02e | 86.39e | 84.62e | 86.39e | 86.39e | 86.98e | 86.98e | 86.98e | 86.98e | 86.98e | 85.8e | 56.96 | 56.96 | 56.96 | 61.39 | 60.9 | 78.21 | 78.21 | 78.21 | 78.21 | 78.21 | 76.87 | 78.21 | 77.56 | 77.56 | 67.86 |
08-02300 | 7 | vhpA' | ANI73772.1 | 96.45e | 100e | 83.43e | 84.62e | 84.02e | 86.39e | 84.62e | 86.39e | 86.39e | 88.17e | 88.17e | 88.17e | 88.17e | 88.17e | 86.98e | 55.7 | 55.7 | 55.7 | 60.13 | 59.62 | 75.64 | 75.64 | 75.64 | 75.64 | 75.64 | 74.15 | 75.64 | 75 | 75 | 66.07 |
CA-347 | 45 | vhpA | AGO29166.1 | 83.43e | 83.43e | 100e | 93.64e | 93.06e | 93.64e | 94.8e | 94.22e | 94.22e | 93.64e | 93.64e | 93.64e | 93.64e | 93.64e | 92.49e | 70.37 | 70.37 | 70.37 | 73.46 | 70.62 | 63.46 | 63.46 | 63.46 | 63.46 | 63.46 | 61.22 | 63.46 | 62.82 | 62.82 | 66.07 |
JKD61 59 | 93 | vhpA | ADL22693.1 | 85.8e | 84.62e | 93.64e | 100e | 92.49e | 94.8e | 95.38e | 94.8e | 94.8e | 95.38e | 95.38e | 95.38e | 95.38e | 95.38e | 94.22e | 69.14 | 69.14 | 69.14 | 72.84 | 70.62 | 63.46 | 63.46 | 63.46 | 63.46 | 63.46 | 61.22 | 63.46 | 62.82 | 62.82 | 66.96 |
HO 5096 0412 | 22 | vhpA | CCG15434.1 | 84.02e | 84.02e | 93.06e | 92.49e | 100e | 95.95e | 94.8e | 96.53e | 96.53e | 95.95e | 95.95e | 95.95e | 95.95e | 95.95e | 94.8e | 69.75 | 69.75 | 69.75 | 72.22 | 74.38 | 64.1 | 64.1 | 64.1 | 64.1 | 64.1 | 61.9 | 64.1 | 63.46 | 63.46 | 65.18 |
ED133 | 133 | vhpA | ADI97346.1 | 86.39e | 86.39e | 93.64e | 94.8e | 95.95e | 100e | 95.95e | 97.69e | 97.69e | 98.27e | 98.27e | 98.27e | 98.27e | 98.27e | 97.11e | 69.14 | 69.14 | 69.14 | 74.07 | 73.75 | 66.03 | 66.03 | 66.03 | 66.03 | 66.03 | 63.95 | 66.03 | 65.38 | 65.38 | 67.86 |
MW2 | 1 | vhpA | BAB94633.1 | 84.62e | 84.62e | 94.8e | 95.38e | 94.8e | 95.95e | 100e | 98.27e | 98.27e | 96.53e | 96.53e | 96.53e | 96.53e | 96.53e | 95.38e | 69.14 | 69.14 | 69.14 | 74.69 | 72.5 | 64.1 | 64.1 | 64.1 | 64.1 | 64.1 | 61.9 | 64.1 | 63.46 | 63.46 | 66.96 |
CN1 | 72 | vhpA | AGU60934.1 | 86.39e | 86.39e | 94.22e | 94.8e | 96.53e | 97.69e | 98.27e | 100e | 100e | 98.27e | 98.27e | 98.27e | 98.27e | 98.27e | 97.11e | 69.14 | 69.14 | 69.14 | 74.07 | 73.75 | 66.03 | 66.03 | 66.03 | 66.03 | 66.03 | 63.95 | 66.03 | 65.38 | 65.38 | 67.86 |
ST201 30943 | 25 | vhpA | AMV84570.1 | 86.39e | 86.39e | 94.22e | 94.8e | 96.53e | 97.69e | 98.27e | 100e | 100e | 98.27e | 98.27e | 98.27e | 98.27e | 98.27e | 97.11e | 69.14 | 69.14 | 69.14 | 74.07 | 73.75 | 66.03 | 66.03 | 66.03 | 66.03 | 66.03 | 63.95 | 66.03 | 65.38 | 65.38 | 67.86 |
N315f | 5 | vhpA | BAB41978.1 | 86.98e | 88.17e | 93.64e | 95.38e | 95.95e | 98.27e | 96.53e | 98.27e | 98.27e | 100e | 100e | 100e | 100e | 100e | 98.84e | 68.52 | 68.52 | 68.52 | 73.46 | 73.12 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 63.27 | 65.38 | 64.74 | 64.74 | 66.96 |
Mu3 | 5 | vhpA | BAF77693.1 | 86.98e | 88.17e | 93.64e | 95.38e | 95.95e | 98.27e | 96.53e | 98.27e | 98.27e | 100e | 100e | 100e | 100e | 100e | 98.84e | 68.52 | 68.52 | 68.52 | 73.46 | 73.12 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 63.27 | 65.38 | 64.74 | 64.74 | 66.96 |
JH1 | 105 | vhpA | ABR51687.1 | 86.98e | 88.17e | 93.64e | 95.38e | 95.95e | 98.27e | 96.53e | 98.27e | 98.27e | 100e | 100e | 100e | 100e | 100e | 98.84e | 68.52 | 68.52 | 68.52 | 73.46 | 73.12 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 63.27 | 65.38 | 64.74 | 64.74 | 66.96 |
04-02981 | 225 | vhpA | ADC36980.1 | 86.98e | 88.17e | 93.64e | 95.38e | 95.95e | 98.27e | 96.53e | 98.27e | 98.27e | 100e | 100e | 100e | 100e | 100e | 98.84e | 68.52 | 68.52 | 68.52 | 73.46 | 73.12 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 63.27 | 65.38 | 64.74 | 64.74 | 66.96 |
ST88 | 88 | vhpA | AQD18902.1 | 86.98e | 88.17e | 93.64e | 95.38e | 95.95e | 98.27e | 96.53e | 98.27e | 98.27e | 100e | 100e | 100e | 100e | 100e | 98.84e | 68.52 | 68.52 | 68.52 | 73.46 | 73.12 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 63.27 | 65.38 | 64.74 | 64.74 | 66.96 |
ST228 | 228 | vhpA | CCJ10585.1 | 85.8e | 86.98e | 92.49e | 94.22e | 94.8e | 97.11e | 95.38e | 97.11e | 97.11e | 98.84e | 98.84e | 98.84e | 98.84e | 98.84e | 100e | 67.9 | 67.9 | 67.9 | 72.22 | 71.88 | 64.1 | 64.1 | 64.1 | 64.1 | 64.1 | 61.9 | 64.1 | 63.46 | 63.46 | 65.18 |
MRSA 252 | 36 | vhpC | CAG39854.1 | 56.96 | 55.7 | 70.37 | 69.14 | 69.75 | 69.14 | 69.14 | 69.14 | 69.14 | 68.52 | 68.52 | 68.52 | 68.52 | 68.52 | 67.9 | 100h | 100h | 100h | 90.81h | 83.12 | 66.67 | 66.67 | 66.67 | 66.67 | 66.67 | 64.63 | 66.67 | 64.74 | 64.74 | 68.75 |
TCH60g | 30 | vhpC | ADQ77850.1 | 56.96 | 55.7 | 70.37 | 69.14 | 69.75 | 69.14 | 69.14 | 69.14 | 69.14 | 68.52 | 68.52 | 68.52 | 68.52 | 68.52 | 67.9 | 100h | 100h | 100h | 90.81h | 83.12 | 66.67 | 66.67 | 66.67 | 66.67 | 66.67 | 64.63 | 66.67 | 64.74 | 64.74 | 68.75 |
ATCC 25923 | 243 | vhpC | AIO20462.1 | 56.96 | 55.7 | 70.37 | 69.14 | 69.75 | 69.14 | 69.14 | 69.14 | 69.14 | 68.52 | 68.52 | 68.52 | 68.52 | 68.52 | 67.9 | 100h | 100h | 100h | 90.81h | 83.12 | 66.67 | 66.67 | 66.67 | 66.67 | 66.67 | 64.63 | 66.67 | 64.74 | 64.74 | 68.75 |
BB155 | 152 | vhpC' | CRL33498.1 | 61.39 | 60.13 | 73.46 | 72.84 | 72.22 | 74.07 | 74.69 | 74.07 | 74.07 | 73.46 | 73.46 | 73.46 | 73.46 | 73.46 | 72.22 | 90.81h | 90.81h | 90.81h | 100h | 77.5 | 71.79 | 71.79 | 71.79 | 71.79 | 71.79 | 70.07 | 71.79 | 69.87 | 69.87 | 75.89 |
71193 | 398 | vhpB' | AFH69102.1 | 60.9 | 59.62 | 70.62 | 70.62 | 74.38 | 73.75 | 72.5 | 73.75 | 73.75 | 73.12 | 73.12 | 73.12 | 73.12 | 73.12 | 71.88 | 83.12 | 83.12 | 83.12 | 77.5 | 100i | 79.49i | 79.49i | 79.49i | 79.49i | 79.49i | 78.91i | 79.49i | 78.21i | 78.21i | 85.71i |
NTCT 8325 | 8 | vhpB | ABD29944.1 | 78.21 | 75.64 | 63.46 | 63.46 | 64.1 | 66.03 | 64.1 | 66.03 | 66.03 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 64.1 | 66.67 | 66.67 | 66.67 | 71.79 | 79.49i | 100j | 100j | 100j | 100j | 100j | 100j | 100j | 97.44j | 97.44j | 95.54j |
11819-97 | 80 | vhpB | AEW64856.1 | 78.21 | 75.64 | 63.46 | 63.46 | 64.1 | 66.03 | 64.1 | 66.03 | 66.03 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 64.1 | 66.67 | 66.67 | 66.67 | 71.79 | 79.49i | 100j | 100j | 100j | 100j | 100j | 100j | 100j | 97.44j | 97.44j | 95.54j |
USA300_FP R3757k | 8 | vhpB | ABD21761.1 | 78.21 | 75.64 | 63.46 | 63.46 | 64.1 | 66.03 | 64.1 | 66.03 | 66.03 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 64.1 | 66.67 | 66.67 | 66.67 | 71.79 | 79.49i | 100j | 100j | 100j | 100j | 100j | 100j | 100j | 97.44j | 97.44j | 95.54j |
COL | 250 | vhpB | AAW36414.1 | 78.21 | 75.64 | 63.46 | 63.46 | 64.1 | 66.03 | 64.1 | 66.03 | 66.03 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 64.1 | 66.67 | 66.67 | 66.67 | 71.79 | 79.49i | 100j | 100j | 100j | 100j | 100j | 100j | 100j | 97.44j | 97.44j | 95.54j |
21282 | 254 | vhpB | ELP41198.1 | 78.21 | 75.64 | 63.46 | 63.46 | 64.1 | 66.03 | 64.1 | 66.03 | 66.03 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 64.1 | 66.67 | 66.67 | 66.67 | 71.79 | 79.49i | 100j | 100j | 100j | 100j | 100j | 100j | 100j | 97.44j | 97.44j | 95.54j |
Newbould 305 | 115 | vhpB | EJE56573.1 | 76.87 | 74.15 | 61.22 | 61.22 | 61.9 | 63.95 | 61.9 | 63.95 | 63.95 | 63.27 | 63.27 | 63.27 | 63.27 | 63.27 | 61.9 | 64.63 | 64.63 | 64.63 | 70.07 | 78.91i | 100j | 100j | 100j | 100j | 100j | 100j | 100j | 97.28j | 97.28j | 95.15j |
TW20 | 239 | vhpB | CBI48744.1 | 78.21 | 75.64 | 63.46 | 63.46 | 64.1 | 66.03 | 64.1 | 66.03 | 66.03 | 65.38 | 65.38 | 65.38 | 65.38 | 65.38 | 64.1 | 66.67 | 66.67 | 66.67 | 71.79 | 79.49i | 100j | 100j | 100j | 100j | 100j | 100j | 100j | 97.44j | 97.44j | 95.54j |
M013 | 59 | vhpB | AEV77849.1 | 77.56 | 75 | 62.82 | 62.82 | 63.46 | 65.38 | 63.46 | 65.38 | 65.38 | 64.74 | 64.74 | 64.74 | 64.74 | 64.74 | 63.46 | 64.74 | 64.74 | 64.74 | 69.87 | 78.21i | 97.44j | 97.44j | 97.44j | 97.44j | 97.44j | 97.28j | 97.44j | 100j | 100j | 99.11j |
MS4 | 338 | vhpB | ALQ99050.1 | 77.56 | 75 | 62.82 | 62.82 | 63.46 | 65.38 | 63.46 | 65.38 | 65.38 | 64.74 | 64.74 | 64.74 | 64.74 | 64.74 | 63.46 | 64.74 | 64.74 | 64.74 | 69.87 | 78.21i | 97.44j | 97.44j | 97.44j | 97.44j | 97.44j | 97.28j | 97.44j | 100j | 100j | 99.11j |
6850 | 50 | vhpB | AGU54604.1 | 67.86 | 66.07 | 66.07 | 66.96 | 65.18 | 67.86 | 66.96 | 67.86 | 67.86 | 66.96 | 66.96 | 66.96 | 66.96 | 66.96 | 65.18 | 68.75 | 68.75 | 68.75 | 75.89 | 85.71i | 95.54j | 95.54j | 95.54j | 95.54j | 95.54j | 95.15j | 95.54j | 99.11j | 99.11j | 100j |
ST, sequence type.
vhp isoforms indicate names of the isoforms.
Protein ID is the accession number of the vhp isoforms.
Percent identities of the vhp isoforms.
vhpA isotype groups.
Prototype for vhpA isotype group.
Prototype for vhpC isotype group.
vhpC isotype groups.
Hybrid vhpB' isotype groups.
vhpB isotype groups.
Prototype for vhpB isotype group.