TABLE 1.

Main sequencing statistics and features found in the five SARS-CoV-2 assemblies^a

Parameter			Result for sample:
			HRL-235	HRL-239	HRL-187	HRL-223	HRL-224
GISAID identifier			EPI_ISL_593772	EPI_ISL_593773	EPI_ISL_593774	EPI_ISL_593775	EPI_ISL_593776
Total no. of raw reads			53,033,958	35,123,841	26,161,830	26,717,077	31,546,940
Total no. of QC-passed reads			35,081,171	16,845,649	18,732,847	21,659,368	193,21,178
Mapped no. of reads (against reference)			2,243,450	30,147	194,144	1,252,518	1,970,766
Avg coverage depth (×) (against reference)			5,951.51	129.696	837.031	4,386.75	5,670.8
% GC content			42	43	44	44	42
Evidence (X) of:
Mutation	Gene/region	Mutation type
C241T	5′ UTR	NA	X	X	X	X	X
C3037T	ORF1a	Silent	X	X	X	X	X
C4002T	ORF1a	T1246I	X	X	X	X	X
G10097A	ORF1a	G3278S	X	X	X	X	X
A10323G	ORF1a	K3353R			X	X
C13536T	ORF1a	Silent	X	X	X	X	X
C14408T	ORF1b	P4715L	X	X	X	X	X
T14775C	ORF1b	Silent		X
A23403G	S	D614G	X	X	X	X	X
C23731T	S	Silent	X	X	X	X	X
C24442T	S	Silent		X
G27160T	M	S213I				X
G28881A	N	R203K	X	X	X	X	X
G28882A	N	R203K	X	X	X	X	X
G28883C	N	G204R	X	X	X	X	X
G29179T	N	Silent	X	X	X	X	X

^aQC, quality checked; UTR, untranslated region; NA, not applicable.