Figure 3.
The Manhattan plots of genome-wide associations with bacterial blight resistance to four representative Xoo races in seven panels. A, Whole panel. B, XI panel. C, GJ panel. D, Chinese panel. E, Overseas panel. F, CHN-LAN panel. G, CHN-MV panel. Gold, violet, green and red points indicate significant SNPs associated with resistance to Xoo races C3, C5, P1, and P9a, respectively. Horizontal dashed lines in the Manhattan plots indicate their respective genome-wide significance thresholds (P-values adjusted by Bonferroni correction): of 3.02 × 10−8, 2.55 × 10−8, 6.81 × 10−8, 3.48 × 10−8, 2.63 × 10−8, 3.17 × 10−8, and 4.23 × 10−8. Arrows point to the genomic regions listed in Supplemental Table S4. XI, Xian/indica; GJ, Geng/japonica