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. Author manuscript; available in PMC: 2022 Aug 20.
Published in final edited form as: J Mol Biol. 2021 Apr 16;433(17):166994. doi: 10.1016/j.jmb.2021.166994

Table 3.

Available structures of LRRC8 in 2021

Structure Functional state PDB code Species Oligomeric state Solubilization conditions Freezing buffer conditions Reference
LRRC8A 4.4 Å Not commented on 6DJB Homo sapiens hexamer 20 mM Tris pH 8, 150 mM NaCl, 1% DMNG, 2 mg/mL iodoacetamide, and EDTA-free protease inhibitor cocktail 20 mM Tris pH 8, 150 mM NaCl, 0.05% digitonin, and EDTA-free protease inhibitor cocktail Kefauver et al., 2018
LRRC8A 4.25 Å Suggestion that the channel may be open but authors state they can not precisely define open/cosed states on the basis of this structure 5ZSU Homo sapiens hexamer 50 mM Tris, pH 8.0, 150 mM NaCl, 5 mM DTT, 1% digitonin 50 mM Tris, pH 8.0, 150 mM NaCl, 5 mM DTT, 0.1% digitonin Kasuya et al., 2018
LRRC8A 4.18 Å Apo-LRRC8A in a constricted state 6O00 Mus musculus hexamer A 10%/2% solution of DDM/CHS was dissolved and clarified by bath sonication in 200 mM HEPES pH 8 prior to addition to the solubilisation buffer. 50 mM HEPES, 150 mM KCl, 1 mM EDTA, 1% DDM, 0.2% CHS, final pH 7.4. 20 mM HEPES, 150 mM KCl, 1 mM EDTA pH 7.4, POPC, MSP2N2 Kern et al., 2019
LRRC8A-refined against 5.01 Å map Authors suggest that the high salt conditions in the freezing buffer favor a closed conformation 6G9L Mus musculus hexamer 25 mM Tris-HCl, pH 8.5, 250 mM NaCl, 3% digitonin,50 μg ml−1 DNase, 50 μg ml−1 RNase A and protease inhibitors 25 mM Tris-HCl pH 8.5, 250 mM NaCl, 0.12% digitonin Deneka and Sawicka et al., 2018
LRRC8A-refined against 4.25 Å map Authors suggest that the high salt conditions in the freezing buffer favor a closed conformation 6G9O Mus musculus hexamer 25 mM Tris-HCl, pH 8.5, 250 mM NaCl, 3% digitonin,50 μg ml−1 DNase, 50 μg ml−1 RNase A and protease inhibitors 25 mM Tris-HCl pH 8.5, 250 mM NaCl, 0.12% digitonin Deneka and Sawicka et al., 2018
LRRC8A-pore domain 3.66 Å Authors suggest that the high salt conditions in the freezing buffer favor a closed conformation 6G8Z Mus musculus hexamer 25 mM Tris-HCl, pH 8.5, 250 mM NaCl, 3% digitonin,50 μg ml−1 DNase, 50 μg ml−1 RNase A and protease inhibitors 25 mM Tris-HCl pH 8.5, 250 mM NaCl, 0.12% digitonin Deneka and Sawicka et al., 2018
LRRC8A-LRR domain 1.80 Å (X-ray structure) n/a 6FNW Mus musculus protomer 10 mM Tris pH 9.4, 200 mM NaCl, 2% DDM, 50 μg ml−1 DNase, protease inhibitors The protein was polished on SEC in 10 mM Tris pH 9.4, 200 mM NaCl, 0.1% CHAPS and then supplemented with 0.5% CHAPS and 1 mM tris(2-carboxyethyl)phosphine prior to crystallization in 0.1 M Bis-Tris propane pH 8.5, 0.2 M sodium malonate and 20% PEG3350 Deneka and Sawicka et al., 2018
LRRC8A-DCPIB 3.21 Å Constricted state 6NZW Mus musculus hexamer A 10%/2% solution of DDM/CHS was dissolved and clarified by bath sonication in 200 mM HEPES pH 8 prior to addition to the solubilisation buffer. 50 mM HEPES, 150 mM KCl, 1 mM EDTA, 1% DDM, 0.2% CHS, final pH 7.4. 20 mM HEPES, 150 mM KCl, 1 mM EDTA pH 7.4, POPC, MSP1E3D1. 100 μM of DCPIB was added prior to freezing. Kern et al., 2019
LRRC8A-DCPIB 3.32 Å Expanded state 6NZZ Mus musculus hexamer A 10%/2% solution of DDM/CHS was dissolved and clarified by bath sonication in 200 mM HEPES pH 8 prior to addition to the solubilisation buffer. 50 mM HEPES, 150 mM KCl, 1 mM EDTA, 1% DDM, 0.2% CHS, final pH 7.4. 20 mM HEPES, 150 mM KCl, 1 mM EDTA pH 7.4, POPC, MSP1E3D1. 100 μM of DCPIB was added prior to freezing. Kern et al., 2019
LRRC8D 4.36 Å Undetermined. Some suggestion that the channel may be in an open conformation 6M04 Homo sapiens hexamer 50 mM Tris, pH 8.0, 150 mM NaCl, 5 mM DTT, 1% digitonin 50 mM Tris, pH 8.0, 150 mM NaCl, 5 mM DTT, and 0.1% digitonin Nakamura et al., 2020
LRRC8A/C heteromer n/a n/a (7.94 Å map) Mus musculus hexamer 25 mM Tris-HCl, pH 8.5, 250 mM NaCl, 3% digitonin,50 μg ml−1 DNase, 50 μg ml−1 RNase A and protease inhibitors 25 mM Tris-HCl pH 8.5, 250 mM NaCl, 0.12% digitonin Deneka and Sawicka et al., 2018