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. 2021 Aug 11;11(9):2441–2452. doi: 10.1002/2211-5463.13261

Fig. 1.

Fig. 1

JWES pipeline for the whole genome and exome data processing, modeling, and downstream analysis. The figure explains all the data processing and analysis steps, which include input, QC, trimming, alignment, sort, mark duplicates, insert size, sort and index, create realignment targets, realign indels, Base Quality Score Recalibration (BQSR), analyze covariates, apply BQSR, recalibrate, extract filtered, compute coverage, annotate and predict.