Table 2.
JWES performance evaluation details based on processed high‐quality—in‐house generated WGS datasets. Table 2 provides an overview of processing time (hours) taken by the JWES pipeline to complete the task of variant calling. The performance of the JWES is based upon number of features including, the size of sample (RAW Data), VCF file size, Memory, Nodes, and designated CPUs‐per‐task.
| Sample IDs | Total variants | RAW data – sample sizes | VCF file size (SNP and Indel) | Time (h) | Number of nodes | CPUs – per – tasks | Memory |
|---|---|---|---|---|---|---|---|
| 1 | 4 867 674 | 1.2 TB | 2.6 GB 654 MB | 65 | 1 | 8 | 46G |
| 2 | 4 928 789 | 1.5 TB | 2.6 GB 678 MB | 74 | 1 | 8 | 46G |
| 3 | 5 808 057 | 1.7 TB | 3.1 GB 812 MB | 77 | 1 | 8 | 46G |
| 4 | 4 897 749 | 1.3 TB | 2.6 GB 657 MB | 61 | 1 | 8 | 46G |
| 5 | 4 883 410 | 1.4 TB | 2.6 GB 671 MB | 70 | 1 | 8 | 46G |
| 6 | 4 983 681 | 1.6 TB | 2.6 GB 698 MB | 83 | 1 | 8 | 46G |
| 7 | 5 000 735 | 1.5 TB | 2.6 GB 698 MB | 88 | 1 | 8 | 46G |
| 8 | 5 902 241 | 1.9 TB | 3.1 GB 837 MB | 95 | 1 | 8 | 46G |
| 9 | 4 870 099 | 1.1 TB | 2.6 GB 654 MB | 57 | 1 | 8 | 46G |
| 10 | 4 925 968 | 1.3 TB | 2.6 GB 675 MB | 67 | 1 | 8 | 46G |