Table 1.
Summary of genome assembly of two Quercus species by FLASH program per sample.
| Samples | Plant species | Tissue | Total bases (raw PE) | Read count (raw tags) | Na (%) | GCb (%) | Q20c (%) | Q30d (%) |
|---|---|---|---|---|---|---|---|---|
| ML.01 | Q. mongolica | Leaf | 54,126,929 | 138,342 | 0 | 60.96 | 99.09 | 95.65 |
| MP.02 | Q. mongolica | Petiole | 41,461,653 | 106,203 | 0 | 60.79 | 99.09 | 95.66 |
| MT.03 | Q. mongolica | Twig | 45,367,451 | 121,913 | 0 | 58.14 | 99.19 | 96.06 |
| MB.04 | Q. mongolica | Branch | 52,175,663 | 134,759 | 0 | 60.67 | 99.15 | 95.90 |
| MS.05 | Q. mongolica | Stem | 48,018,514 | 123,822 | 0 | 59.65 | 99.05 | 95.49 |
| MR.06 | Q. mongolica | Root | 31,056,235 | 79,747 | 0 | 59.44 | 99.00 | 95.35 |
| SL.07 | Q. serrata | Leaf | 47,729,808 | 121,134 | 0 | 61.53 | 99.05 | 95.37 |
| SP.08 | Q. serrata | Petiole | 39,921,750 | 110,715 | 0 | 54.54 | 99.30 | 96.63 |
| ST.09 | Q. serrata | Twig | 45,102,554 | 118,695 | 0 | 59.18 | 99.12 | 95.68 |
| SB.10 | Q. serrata | Branch | 42,153,555 | 117,148 | 0 | 56.64 | 99.24 | 96.29 |
| SS.11 | Q. serrata | Stem | 43,534,842 | 115,772 | 0 | 58.31 | 99.15 | 95.97 |
| SR.12 | Q. serrata | Root | 53,601,813 | 136,099 | 0 | 61.45 | 99.01 | 95.18 |
aThe percentage of ambiguous bases (N) in sequence reads.
bThe GC content percentage in sequence reads.
cThe percentage of bases in which the phred quality score (Q score) is above 20.
dThe percentage of bases in which Q score is above 30.