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. 2021 Aug 31;28(1):1722–1736. doi: 10.1080/10717544.2021.1963352

Table 1.

List of web servers used in the text.

Webserver Purpose URL of webserver Reference
ExPASy Physico-chemical predictions https://web.expasy.org/protscale/ (Wilkins et al., 1999)
EMBOSS Hydrophobic moment prediction https://www.bioinformatics.nl/cgi-bin/emboss/hmoment (Carver & Bleasby, 2003)
Composition profiler Flexibility and hydrophilicity prediction http://www.cprofiler.org/ (Vacic et al., 2007)
IUPred2A, PrDOS,
ANCHOR2
Disorder prediction http://iupred2a.elte.hu
http://prdos.hgc.jp/cgi-bin/top.cgi
http://anchor.elte.hu/
(Mészáros et al., 2018; Ishida & Kinoshita, 2007)
CIDER Conformational disorder prediction http://pappulab.wustl.edu/CIDER/analysis/ (Holehouse et al., 2017)
RaptorX Secondary structure prediction http://raptorx.uchicago.edu/ (Wang et al., 2016)
NetSurfP Surface accessibility, secondary structure, and disorder prediction https://services.healthtech.dtu.dk/service.php?NetSurfP-2.0 (Klausen et al., 2019)
I-TASSER 3D structure prediction https://zhanglab.ccmb.med.umich.edu/I-TASSER/ (Yang & Zhang, 2015)
PROCHECK, ERRAT, Verify-3D 3D structure validation http://services.mbi.ucla.edu/SAVES/ (Colovos & Yeates, 1993; Laskowski et al., 1993; Eisenberg et al., 1997)
Ramachandran 3D structure validation http://mordred.bioc.cam.ac.uk/_rapper/rampage.php (Ramachandran et al., 1963)
PDB2PQR server Electrostatic potential evaluation https://server.poissonboltzmann.org/ (Dolinsky et al., 2004)
PPM server Membrane interaction evaluation https://opm.phar.umich.edu/ppm_server (Lomize et al., 2012)
CELLPM Server Membrane interaction evaluation https://cellpm.org/cellpm_server (Lomize & Pogozheva, 2018)
CPPred-FL CPP prediction http://server.malab.cn/CPPred-FL/ (Qiang et al., 2018)
SkipCPP-Pred CPP prediction http://server.malab.cn/SkipCPP-Pred/Index.html (Wei et al., 2017a)
MLCPP CPP prediction http://www.thegleelab.org/MLCPP/ (Manavalan et al., 2018)
CPPred-RF CPP prediction http://server.malab.cn/CPPred-RF/ (Wei et al., 2017b)
CellPPD CPP prediction http://crdd.osdd.net/raghava/cellppd/ (Gautam et al., 2013)
Class I immunogenicity server Immunogenicity prediction http://tools.iedb.org/immunogenicity/ (Calis et al., 2013)
ProtLifePred server Half-life prediction http://protein-n-end-rule.leadhoster.com/ (Bachmair et al., 1986)