Table 1.

Transcriptomic data sets within references cited in this review and data sets used in our lab (nonexhaustive list of those publically available). For AML type, French classification nomenclature was preferentially used and, when not available, cytogenetics was used instead. AMKL, acute megakaryoblastic leukaemia; CN‐AML, cytogenetically normal AML; LSK, Lin⁻SCA1⁺c‐KIT⁺; PB, peripheral blood.

Data set ID	Location	Species	Age	Cell type	AML type	Treatment	Type of data	Reference
AML1	https://www.stjuderesearch.org/site/data/AML1/	Human	Paediatric and Adult	Primary BM, PB	M0‐M7	None	Microarray	Ross et al. (2004) [119]
GSE1159	GEO	Human	Adult	Primary BM, PB	AML (M0 – M7) and healthy	None	Microarray	Valk et al. (2004) [42]
GSE4119	GEO	Human	Paediatric and Adult	Primary BM, PB	AMKL	None	Microarray	Bourquin et al. (2006) [120]
GSE5258	GEO	Human	Adult	Cell lines MCF7, HL60, ssMCF7, PC3, SKMEL5	AML M2, Breast adenocarcinoma, prostate carcinoma, melanoma	164 small molecules	Microarray	Lamb et al. (2006) [104]
GSE17061	GEO	Human	Unknown	Primary BM, PB	AML‐M0	None	Microarray	Silva et al. (2009) [121]
GSE6891	GEO	Human	Adult	Primary BM, PB	M0‐M6 and nondetermined	None	Microarray	Verhaak et al. (2009) [122]
GSE24006	GEO	Human	Adult	Primary BM, PB, cord blood	AML and healthy	None	Microarray	Gentles et al. (2010) [123]
GSE17855	GEO	Human	Paediatric	Primary BM, PB	MLL‐rearrangements, t(8;21)(q22;q22), Inv(16)(p13;q22), t(15;17)(q21;q22), t(7;12)(q36;p13), CN‐AML, etc.	Patients treated with Cytarabine and anthracycline	Microarray	Balgobind et al. (2011) [124]
GSE30377	GEO	Human	Unknown	Xenotransplanted Primary BM cells	Unknown	None	Microarray	Eppert et al. (2011) [84]
GSE64776	GEO	Human	Adult	Primary cells	MLL	None	Microarray	Iwasaki et al. (2015) [90]
GSE64773	GEO	Mouse	Unknown	Primary cells	HoxA9 Meis1 shRNA induced AML and healthy	None	Microarray	Iwasaki et al. (2015) [90]
GSE74666	GEO	Human	Paediatric	Cell line MV4‐11	AML M5 t(4;11)(q21;q23)	Sorafenib	Microarray	Ref. [125]
GSE76009	GEO	Human	Adult	Primary BM, PB, peritoneal fluid	APL, non‐APL	None	Microarray	Ng et al. (2016) [85]
GSE81842	GEO	Mouse	Unknown	Primary BM, PB, spleen, gonadal adipose tissue	BCR‐ABL and NUP98‐HOXA9	None	RNA‐Seq	Ye et al. (2016) [116]
GSE92778	GEO	Human	Adult	Cultured Primary BM cells from patients	AML and healthy	None	Microarray	Boyd et al. (2017) [126]
GSE107662	GEO	Mouse	0 – 52w	Primary FL, BM	NUP98‐HOXA9 retrovirus	None	RNA‐Seq	Chaudhury et al. (2018) [23]
GSE122066	GEO	Mouse	3w, 52w	Primary BM	LSK, non‐AML	None	RNA‐Seq	Chaudhury et al. (2018) [23]
GSE114111	GEO	Human	Adult	Cell line MOLM‐13	ins(11;9)(q23;p22p23)	FIS1‐shRNA	RNA‐Seq	Pei et al. (2018) [80]
GSE114109	GEO	Human	Adult	Primary BM, PB	Multiple cytogenetics	FIS1‐shRNA	RNA‐Seq	Pei et al. (2018) [80]
GSE114105	GEO	Human	Adult	Primary BM, PB	Multiple cytogenetics	PRKAA1‐shRNA	RNA‐Seq	Pei et al. (2018) [80]
GSE116567	GEO	Human	Adult	Primary BM, PB	Multiple cytogenetics	Untreated, venetoclax and azacitidine	RNA‐Seq	Jones et al. (2018) [79]
GSE134506	GEO	Human	Adult	Cell line HEL	AML M6	Doxorubicin, Cytarabine, Decitabine	Microarray	Caiado et al. (2019) [71]
TARGET	https://ocg.cancer.gov/programs/target/data‐matrix	Human	Paediatric	Primary cells	t(6;9), t(8;21), t(3;5)(q25;q34), t(6;11)(q27;q23), t(9;11)(p22;q23), t(10;11)(p11.2;q23), t(11:19)(q23:p13.1), inv(16), del5q, del7q, del9q, MLL	None	RNA‐Seq and microarray	Duployez et al. (2019) [92]
E‐MTAB‐7729	Array Express	Human	Paediatric	Primary cells	TAM and ML‐DS	None	Microarray	Labuhn et al. (2019) [45]
GSE116256	GEO	Human	Adult	Primary BM, cell lines MUTZ‐3, OCI‐AML‐3	AML and healthy	Untreated and treated patients (multiple drugs)	scRNA‐Seq	van Galen et al. (2019) [67]