Antibodies |
|
Rabbit polyclonal anti-Drp1 (1:1000) |
This paper |
N/A |
Rabbit polyclonal anti-phospho Drp1 Ser600 (1:2000) |
This paper |
N/A |
Rabbit polyclonal anti-phospho Drp1 Ser579 (1:1000) |
This paper |
N/A |
Rabbit monoclonal antibody anti-GAPDH (Clone 14C10) (1:2000) |
Cell Signaling Technology |
Cat#2118; RRID: AB_561053
|
Rabbit polyclonal anti-Pan-cadherin (1:1000) |
Cell Signaling Technology |
Cat#4068; RRID: AB_2158565
|
Rabbit monoclonal anti- Rb (D20) (1:1000) |
Cell Signaling Technology |
Cat#9313; RRID: AB_1904119
|
Rabbit polyclonal phospho-Rb (Ser780) (1:1000) |
Cell Signaling Technology |
Cat# 9307; RRID: AB_330015
|
Rabbit monoclonal anti-Cdk1 (1:1000) |
Abcam |
Cat#ab133327; RRID: AB_11155333
|
Rabbit polyclonal anti-phospho-Cdk1 (Tyr15) (1:500) |
Millipore |
Cat# 219440; RRID: AB_564425
|
Rabbit polyclonal anti-Mfn1(1:2000) |
Kulkarni et al., 2016 |
N/A |
Rabbit polyclonal anti-Mfn2 (1:2000) |
Kulkarni et al., 2016 |
N/A |
Mouse monoclonal anti- OPA1 (Clone 18/OPA1) (1:2000) |
BD Biosciences |
Cat# 612606; RRID: AB_399888
|
Mouse monoclonal anti- Anti-VDAC1 / Porin (1:5000) |
Abcam |
Cat#ab14734; RRID: AB_443084
|
Mouse monoclonal anti-NDUFA9 (Clone 20C11) (1:2000) |
Abcam |
Cat# ab14713; RRID: AB_301431
|
Mouse monoclonal anti-SDHA (Clone 2E3) (1:5000) |
Abcam |
Cat# ab14715; RRID: AB_301433
|
Mouse monoclonal anti-UQCRC1 (1:2000) |
Abcam |
Cat# ab110252; RRID: AB_10863633
|
Mouse monoclonal anti-MTCO1 (1:1000) |
Abcam |
Cat#ab14705; RRID: AB_2084810
|
Mouse monoclonal anti-ATP5A (1:5000) |
Abcam |
Cat# ab14748; RRID: AB_301447
|
Rabbit polyclonal anti-UCP1 (1:5000) |
Abcam |
Cat# ab10983; RRID: AB_2241462
|
|
Bacterial and virus strains |
|
DH5alpha competent |
ThermoFisher |
#18265017 |
|
Chemicals, peptides, and recombinant proteins |
|
Oligomycin |
Sigma |
#1404-19-9 |
FCCP |
Sigma |
#370-86-5 |
Rotenone |
Sigma |
#83-79-4 |
Antimycin A |
Sigma |
#1397-94-0 |
CL 316,243 |
Sigma |
#C5976 |
Glucagon |
Novo Nordisk |
#0169-7065-15 |
Isoproterenol hydrochloride |
Sigma |
#I6504 |
Glucose |
GIBCO |
#15023021 |
Insulin (100U/mL) |
NovoRapid |
# 058610 |
Roscovitine |
Cell Signaling Technology |
#9885 |
KOD Hot Start DNA Polymerase |
Merck/SigmaAldrich |
71086 |
T4 DNA ligase |
Fermentas/Thermofisher |
#EL0016 |
BamH1 |
Fermentas/Thermofisher |
#FD0055 |
Not1 |
Fermentas/Thermofisher |
#ER0592 |
Dpn1 |
Fermentas/Thermofisher |
#ER1702 |
|
Critical commercial assays |
|
Proteome Profiler Mouse Adipokine Array Kit |
R&D Systems |
#ARY013 |
DNeasy Blood & Tissue Kit |
QIAGEN |
#69504 |
BigDye Terminator 3.1 kit |
Applied Biosystems |
# 4337454 |
NucleoSpin® Plasmid |
MACHEREY-NAGEL |
740499 |
NucleoSpin Gel and PCR clean-up kit |
MACHEREY-NAGEL |
740609 |
|
Deposited data |
|
Metabolomics |
MetaboLight |
MTBLS3035 |
Proteomics |
ProteomeXchange |
PXD027108 |
|
Experimental models: Cell lines |
|
Mouse: Drp1 KO mouse embryonic fibroblasts |
Ishihara et al., 2009 |
N/A |
Mouse: Drp1 WT mouse embryonic fibroblasts |
Ishihara et al., 2009 |
N/A |
|
Experimental models: Organisms/strains |
|
Mouse: Dnm1l S643A knock-in (KI) |
Taconic |
C57BL/6NTac-Dnm1ltm3143(S643A)Arte |
Mouse: Dnm1l S643A wild type (WT) |
Taconic |
C57BL/6NTac |
|
Oligonucleotides |
|
Primers for cloning, see Table S1
|
This paper |
N/A |
Primers for RT-qPCR, see Table S2
|
This paper |
N/A |
|
Recombinant DNA |
|
Plasmid: pcDNA3.1 (+) |
Thermofisher |
V79520 |
Plasmid: pcDNA3.1(+) Drp1 |
A gift from Dr. David Chan, California Institute of Technology (Caltech, USA) |
Addgene reference #34706 |
Plasmid: pcDNA3.1 Drp1 WT |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S579A |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S579E |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S579D |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S600A |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S600E |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S600D |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S579E/S600E |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S579A/S600E |
This paper |
N/A |
Plasmid: pcDNA3.1 Drp1 S579E/S600A |
This paper |
N/A |
Plasmid: pVITRO2-neo-mcs |
InvivoGen |
pvitro2-nmcs |
Plasmid: pVitro2- Drp1 WT - mtDSRED |
This paper |
N/A |
Plasmid: pVitro2- Drp1 S579A - mtDSRED |
This paper |
N/A |
Plasmid: pVitro2- Drp1 S579E - mtDSRED |
This paper |
N/A |
Plasmid: pVitro2- Drp1 S600A - mtDSRED |
This paper |
N/A |
Plasmid: pVitro2- Drp1 S600E - mtDSRED |
This paper |
N/A |
Plasmid: pVitro2- Drp1 S579E/S600E - mtDSRED |
This paper |
N/A |
Plasmid: pVitro2- Drp1 S579A/S600E - mtDSRED |
This paper |
N/A |
Plasmid: pVitro2- Drp1 S579E/S600A - mtDSRED |
This paper |
N/A |
|
Software and algorithms |
|
ImageJ |
Schneider et al., 2012 |
https://imagej.nih.gov/ij/ |
xcms |
Tautenhahn et al., 2012 |
https://xcmsonline.scripps.edu |
MiNa |
Valente et al., 2017 |
https://github.com/StuartLab/MiNA |
GraphPad Prism 6 |
GraphPad Software |
https://www.graphpad.com/ |