Bacterial and virus strains |
|
Mycobacterium ulcerans NCTC 10417 |
ATCC |
Cat#ATCC 19432 |
|
Biological samples |
|
Human skin swabs (Negative and positive for M. ulcerans) |
Centre de Dépistage et de Traitement de l'Ulcère de Buruli, Pobè, Benin |
https://ilepfederation.org/centre-de-depistage-et-de-traitement-de-la-lepre-et-de-lulcere-de-buruli-raoul-et-madeleine-follereau-de-pobe/ |
Human genomic DNA |
Promega |
Cat#G304A |
|
Chemicals, peptides, and recombinant proteins |
|
LbCas12a |
NEB |
Cat#M0653T |
Recombinant Cas12a from Acidaminococcus sp. BV3L6
|
IDT |
AsCas12a |
Recombinant Cas13a from Leptotrichia buccalis, wild-type |
East-Seletsky et al., 2017 |
LbuCas13a |
Recombinant Cas13a from Leptotrichia buccalis, processing mutant K1082A |
East-Seletsky et al., 2017 |
LbuCas13a K1082A |
DNase I |
NEB |
Cat#M0303S |
RNase A |
IDT |
Cat#11-02-01-02 |
Dynabeads™ MyOne™ Streptavidin C1 |
ThermoFisher |
Cat#65002 |
|
Critical commercial assays |
|
MagMAX™ Total Nucleic Acid Isolation Kit |
ThermoFisher |
Cat#AM1840 |
Qubit™ 1X dsDNA HS Assay Kit |
ThermoFisher |
Cat#Q33231
|
TaqMan Gene Expression Master Mix |
Life Technologies |
Cat# 4369106 |
|
Oligonucleotides |
|
ssRNA oligos |
Synthego |
See Table S1
|
DNA oligos |
IDT |
See Table S1
|
IS2404
|
IDT |
See Table S1
|
RNaseAlert Substrate |
IDT |
Cat#11-04-03-03 |
DNaseAlert Substrate |
IDT |
Cat#11-04-03-04 |
|
Software and algorithms |
|
Prism 8 |
GraphPad |
https://www.graphpad.com/ |
Excel |
Microsoft |
https://www.microsoft.com/ |