Table 1.

Overview of RNA-Seq data

Sample	Raw Reads	Clean Reads	Raw bases	Clean Pairs (%)	Total_Alignments (bp)	Coverage (Total_Alignments/ Genome_length)%)	Successfully assigned alignments
XL1	50,011,936	49,981,382	4,501,074,240	24,990,691 (99.94 %)	25,827,924	1.0323273	19,158,796 (74.20 %)
XL2	49,981,708	49,963,086	4,498,353,720	24,981,543 (99.96 %)	25,815,470	1.0318295	18,329,302 (71.00 %)
XL3	50,413,430	50,394,894	4,537,208,700	25,197,447 (99.96 %)	26,161,129	1.0456453	18,061,930 (69.00 %)
XL4	50,375,286	50,340,582	4,533,775,740	25,170,291 (99.93 %)	25,968,916	1.0379626	18,816,287 (72.50 %)
XL5	50,368,172	50,349,522	4,533,135,480	25,174,761 (99.96 %)	26,071,102	1.0420470	18,272,816 (70.10 %)
XL6	52,218,318	50,837,574	7,832,747,700	25,418,787 (97.36 %)	26,311,441	1.0516532	19,834,463 (75.40 %)
XL7	50,004,320	48,770,860	7,500,648,000	24,385,430 (97.53 %)	25,226,371	1.0082835	18,583,326 (73.70 %)
XS1	66,455,060	64,122,488	6,645,506,000	32,061,244 (96.49 %)	32,672,160	1.3058875	22,968,529 (70.30 %)
XS2	66,046,332	63,662,060	6,604,633,200	31,831,030 (96.39 %)	31,595,025	1.2628350	22,116,518 (70.00 %)
XS3	63,770,656	63,770,656	6,377,065,600	30,775,719 (96.52 %)	29,952,835	1.1971976	20,607,551 (68.80 %)
XS4	68,528,104	66,122,768	6,852,810,400	33,061,384 (96.49 %)	33,824,450	1.3519438	25,635,551 (75.79 %)
XS5	66,959,152	64,856,636	6,695,915,200	32,428,318 (96.86 %)	32,875,650	1.3140208	23,289,111 (70.84 %)
XS6	67,665,568	65,344,640	6,766,556,800	32,672,320 (96.57 %)	31,838,098	1.2725505	22,703,748 (71.31 %)
XS7	67,002,792	64,436,586	6,700,279,200	32,218,293 (96.17 %)	31,845,484	1.2728457	22,524,311 (70.73 %)