Table 4.
Compare of DEGs between Xiang and Yorkshire pigs (reported by Zhang et al. [17])
| No. | Gene_ID | Gene name | Xiang pig | Yorkshire sow | Gene description | ||
|---|---|---|---|---|---|---|---|
| Up/Down (XL/XS) | Log2FC | Up/Down (YH/YL) | Log2FC | ||||
| 1 | ENSSSCG00000018082 | COX3 | UP | 2.61 | Up | 2.17 | cytochrome c oxidase subunit III |
| 2 | ENSSSCG00000034942 | STAR | UP | 6.42 | Up | 3.56 | steroidogenic acute regulatory protein |
| 3 | ENSSSCG00000018094 | CYTB | UP | 3.09 | Up | 2.01 | cytochrome b |
| 4 | ENSSSCG00000025273 | CYP11A1 | UP | 4.92 | Up | 3.99 | cytochrome P450 family 11 subfamily A member 1 |
| 5 | ENSSSCG00000010400 | MSMB | UP | 6.37 | Up | 4.58 | microseminoprotein beta |
| 6 | ENSSSCG00000009759 | SCARB1 | UP | 4.22 | Up | 3.59 | scavenger receptor class B member 1 |
| 7 | ENSSSCG00000028512 | LDLR | UP | 3.78 | Up | 2.73 | low density lipoprotein receptor |
| 8 | ENSSSCG00000017164 | TIMP-2 | UP | 1.90 | Up | 1.65 | TIMP metallopeptidase inhibitor 2 |
| 9 | ENSSSCG00000039548 | PTGFR | UP | 4.56 | Up | 3.62 | prostaglandin F receptor |
| 10 | ENSSSCG00000012583 | ACSL4 | UP | 2.87 | Up | 2.33 | acyl-CoA synthetase long chain family member 4 |
| 11 | ENSSSCG00000007435 | PLTP | UP | 3.08 | Up | 3.21 | phospholipid transfer protein |
| 12 | ENSSSCG00000013401 | DKK3 | UP | 2.46 | Up | 2.20 | dickkopf WNT signaling pathway inhibitor 3 |
| 13 | ENSSSCG00000012625 | PGRMC1 | UP | 2.02 | Up | 2.66 | progesterone receptor membrane component 1 |
| 14 | ENSSSCG00000016267 | ITM2C | UP | 2.20 | Up | 1.98 | integral membrane protein 2 C |
| 15 | ENSSSCG00000011747 | CLDN11 | UP | 4.14 | Up | 2.77 | claudin 11 |
| 16 | ENSSSCG00000017024 | CCNG1 | UP | 1.59 | Up | 1.58 | cyclin G1 |
| 17 | ENSSSCG00000018084 | ND3 | UP | 3.87 | Up | 1.87 | NADH dehydrogenase subunit 3 |
| 18 | ENSSSCG00000010554 | SCD | UP | 1.95 | Up | 3.97 | stearoyl-CoA desaturase |
| 19 | ENSSSCG00000014338 | HSPA9 | UP | 1.02 | Up | 1.69 | heat shock protein family A (Hsp70) member 9 |
| 20 | ENSSSCG00000036956 | SOCS3 | UP | 4.31 | Up | 2.90 | suppressor of cytokine signaling 3 |
| 21 | ENSSSCG00000032007 | RTN4 | UP | 1.56 | Up | 2.36 | reticulon 4 |
| 22 | ENSSSCG00000034207 | CEBPB | UP | 3.92 | Up | 2.53 | CCAAT enhancer binding protein beta |
| 23 | ENSSSCG00000025486 | MDH2 | UP | 1.27 | Up | 2.16 | malate dehydrogenase 2 |
| 24 | ENSSSCG00000015709 | SLC35F5 | UP | 2.42 | Up | 2.45 | solute carrier family 35 member F5 |
| 25 | ENSSSCG00000008701 | LRPAP1 | UP | 1.30 | Up | 1.45 | LDL receptor related protein associated protein 1 |
| 26 | ENSSSCG00000003139 | BCAT2 | UP | 1.65 | Up | 2.78 | branched chain amino acid transaminase 2 |
| 27 | ENSSSCG00000001770 | CTSH | UP | 1.47 | Up | 1.77 | cathepsin H |
| 28 | ENSSSCG00000022742 | PRDX6 | UP | 1.53 | Up | 2.52 | peroxiredoxin 6 |
| 29 | ENSSSCG00000027114 | SCP2 | UP | 1.93 | Up | 5.14 | sterol carrier protein 2 |
| 30 | ENSSSCG00000015268 | FMO1 | UP | 4.32 | Up | 3.71 | flavin containing dimethylaniline monoxygenase 1 |
| 31 | ENSSSCG00000007739 | GUSB | UP | 1.29 | Up | 2.39 | glucuronidase beta |
| 32 | ENSSSCG00000013599 | ANGPTL4 | UP | 2.89 | Up | 2.76 | angiopoietin like 4 |
| 33 | ENSSSCG00000009150 | HADH | UP | 1.24 | Up | 1.39 | hydroxyacyl-CoA dehydrogenase |
| 34 | ENSSSCG00000000767 | ATP6V1E1 | UP | 1.04 | Up | 1.63 | ATPase H + transporting V1 subunit E1 |
| 35 | ENSSSCG00000008237 | RETSAT | UP | 1.06 | Up | 1.39 | retinol saturase |
| 36 | ENSSSCG00000005970 | SQLE | UP | 2.40 | Up | 3.42 | squalene epoxidase |
| 37 | ENSSSCG00000009062 | MGARP | UP | 4.56 | Up | 3.66 | mitochondria localized glutamic acid rich protein |
| 38 | ENSSSCG00000008963 | AREG | UP | 9.30 | Up | 5.20 | amphiregulin |
| 39 | ENSSSCG00000006522 | GBA | UP | 1.28 | Up | 1.78 | glucosylceramidase beta |
| 40 | ENSSSCG00000027130 | TNFRSF12A | UP | 3.34 | Up | 1.84 | TNF receptor superfamily member 12 A |
| 41 | ENSSSCG00000030318 | SDHC | UP | 1.43 | Up | 1.83 | succinate dehydrogenase complex subunit C |
| 42 | ENSSSCG00000000757 | ADIPOR2 | UP | 1.13 | Up | 1.86 | adiponectin receptor 2 |
| 43 | ENSSSCG00000011723 | MME | UP | 2.23 | Up | 2.28 | membrane metalloendopeptidase |
| 44 | ENSSSCG00000009219 | IBSP | UP | 9.29 | Up | 3.41 | integrin binding sialoprotein |
| 45 | ENSSSCG00000010853 | EPHX1 | UP | 2.21 | Up | 3.74 | epoxide hydrolase 1 |
| 46 | ENSSSCG00000010537 | GOT1 | UP | 1.48 | Up | 3.39 | glutamic-oxaloacetic transaminase 1 |
| 47 | ENSSSCG00000032213 | DBI | UP | 1.30 | Up | 1.55 | diazepam binding inhibitor, acyl-CoA binding protein |
| 48 | ENSSSCG00000022998 | PKIG | UP | 1.74 | Up | 1.62 | cAMP-dependent protein kinase inhibitor gamma |
| 49 | ENSSSCG00000006296 | ATP1B1 | UP | 2.15 | Up | 2.59 | ATPase Na+/K + transporting subunit beta 1 |
| 50 | ENSSSCG00000001435 | AGPAT1 | UP | 1.91 | Up | 1.42 | 1-acylglycerol-3-phosphate O-acyltransferase 1 |
| 51 | ENSSSCG00000006369 | F11R | UP | 2.76 | Up | 2.34 | F11 receptor |
| 52 | ENSSSCG00000016990 | ATP6V0E1 | UP | 1.76 | Up | 1.81 | ATPase H + transporting V0 subunit e1 |
| 53 | ENSSSCG00000037912 | FITM2 | UP | 1.95 | Up | 2.20 | fat storage inducing transmembrane protein 2 |
| 54 | ENSSSCG00000006337 | HSD17B7 | UP | 1.69 | Up | 3.74 | hydroxysteroid 17-beta dehydrogenase 7 |
| 55 | ENSSSCG00000028943 | ECH1 | UP | 1.57 | Up | 2.16 | enoyl-CoA hydratase 1 |
| 56 | ENSSSCG00000021774 | B3GALNT1 | UP | 1.94 | Up | 2.28 | beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) |
| 57 | ENSSSCG00000034896 | HPRT1 | UP | 1.43 | Up | 1.50 | hypoxanthine phosphoribosyltransferase 1 |
| 58 | ENSSSCG00000015299 | STEAP4 | UP | 2.61 | Up | 5.01 | STEAP4 metalloreductase |
| 59 | ENSSSCG00000009245 | SCD5 | UP | 1.13 | Up | 1.89 | stearoyl-CoA desaturase 5 |
| 60 | ENSSSCG00000036893 | PTHLH | UP | 3.24 | Up | 3.37 | parathyroid hormone like hormone |
| 61 | ENSSSCG00000006512 | FDPS | UP | 2.46 | Up | 3.53 | farnesyl diphosphate synthase |
| 62 | ENSSSCG00000038221 | HSD17B2 | UP | 5.76 | Up | 6.95 | hydroxysteroid 17-beta dehydrogenase 2 |
| 63 | ENSSSCG00000007507 | PCK1 | UP | 5.70 | Up | 6.96 | phosphoenolpyruvate carboxykinase 1 |
| 64 | ENSSSCG00000000182 | WNT10B | UP | 3.38 | Up | 2.90 | Wnt family member 10B |
| 65 | ENSSSCG00000016958 | PIK3R1 | Down | -1.05 | Down | -1.50 | phosphoinositide-3-kinase regulatory subunit 1 |
| 66 | ENSSSCG00000025349 | CCDC14 | Down | -2.19 | Down | -1.49 | coiled-coil domain containing 14 |
| 67 | ENSSSCG00000013772 | ASF1B | Down | -1.54 | Down | -1.95 | anti-silencing function 1B histone chaperone |
| 68 | ENSSSCG00000031027 | IRS4 | Down | -2.02 | Down | -3.11 | insulin receptor substrate 4 |
| 69 | ENSSSCG00000005136 | IFNE | Down | -3.02 | Down | -2.10 | interferon epsilon |
| 70 | ENSSSCG00000009490 | DCT | Down | -1.58 | Down | -1.86 | dopachrome tautomerase |
| 71 | ENSSSCG00000006125 | CALB1 | Down | -2.37 | Up | 4.00 | calbindin 1 |