. 2021 Sep 2;10(35):e00545-21. doi: 10.1128/MRA.00545-21

TABLE 1.

Description of Leishmania species and strains, including assembly parameters and links

Genus or subgenus	Species	Strain	WHO code	Source	Provenance	BioProject accession no.^a	Sequencing platforms	Assembler	No. of contigs	N₅₀ (bp)	Assembly size (bp)	% GC	No. of pseudochromosomes	No. of protein-coding genes	Reference for other assembly
L. Leishmania	L. major	SD75.1 (clone)	MHOM/SN/74/SD	Human, cutaneous	D. Sacks, Bethesda, MD	PRJNA50303	454, Illumina	Newbler	891	95,380	31,727,271	59.3	36	8,818
		LV39 (clone 5)	MHOM/Sv/59/P	Human, cutaneous	R. Titus, Boston, MA	PRJNA50301	454, Illumina	Newbler	1,667	71,452	31,961,985	59.5	36	8,971
	L. gerbilli	LEM452	MRHO/CN/60/GERBILLI	Gerbil	P. Bastien, J.-P. Dedet, Montpellier, France	PRJNA192717	454, Illumina	AllPaths	1,248	57,008	30,822,621	59.6	36	8,599
	L. turanica	LEM423	MRHO/SU/65/VL	Gerbil	P. Bastien, J.-P. Dedet, Montpellier, France	PRJNA192712	454, Illumina	AllPaths	1,669	39,210	30,876,294	59.5	36	8,608
	L. arabica	LEM1108	MPSA/SA/83/JISH220	Psammomys sp.	P. Bastien, J.-P. Dedet, Montpellier, France	PRJNA192710	454, Illumina	AllPaths	1,530	52,119	30,774,332	59.2	36	8,646
	L. tropica	L590	MHOM/IL/1990/P283	Human, cutaneous	C. Jaffe, Jerusalem, Israel	PRJNA169676	454, Illumina	AllPaths	1,938	32,739	31,326,083	59.6	36	8,824	12
	L. aethiopica	L147	MHOM/ET/1972/L100	Human, diffuse cutaneous, relapsing	C. Jaffe, Jerusalem, Israel	PRJNA169673	454, Illumina	AllPaths	1,758	38,498	31,026,739	60.1	36	8,722
L. Viannia	L. braziliensis	M2903	MHOM/BR/75/M2903	Human, cutaneous	J. Shaw, Brazil	PRJNA165955	454, Illumina	Newbler	3,934	61,918	32,590,753	57.4	35	9,269
	L. panamensis	L13	MHOM/COL/81/L13	Human, mucosal	N. Saravia, Cali, Colombia	PRJNA165959	454, Illumina	AllPaths	3,163	22,576	31,108,242	57.4	35	8,665
L. Mundinia	L. enriettii	LEM3045	MCAV/BR/95/CUR3	Cavia porcellus (guinea pig)	P. Bastien, J.-P. Dedet, Montpellier, France	PRJNA192711	454, Illumina	AllPaths	1,171	102,666	30,427,298	59.3	36	8,731	14
	L. martiniquensis	LEM2494	MHOM/MQ/92/MAR1	Human, diffuse cutaneous, HIV	P. Bastien, J.-P. Dedet, Montpellier, France	PRJNA192703	454, Illumina	AllPaths	628	147,290	30,528,357	59.6	36	8,483	14
Endotrypanum	Endotrypanum monterogei	LV88	None	Choloepus hoffmanni (sloth)	Michael Chance, Liverpool, UK	PRJNA165953	454, Illumina	Newbler	3,517	33,059	32,086,870	52.5	36	8,285	13
Crithidia	Crithidia fasciculata	Cf-C1 (clone)	None	Mosquito	Larry Simpson, Los Angeles, CA	PRJNA165885	454, Illumina, PacBio	HGAP	494	778,443	41,297,378	57.0	30	9,619	8

Each BioProject link contains links to the current assembly, primary data sets, and other relevant information.